View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18422_low_9 (Length: 310)
Name: NF18422_low_9
Description: NF18422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18422_low_9 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 41453160 - 41453413
Alignment:
| Q |
18 |
gtacttttgtcagttctgatcttaattatatggatttacatatcacttatttcctcagcaaaacccaagttgggctagaaagaaaaatccaaaaagagtg |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |
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| T |
41453160 |
gtacttttttcagttctgatcttaattatatggatttacatatcacttatttcctcagcaaaacccaagttgggctagaaa----aattcagaaagagtg |
41453255 |
T |
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| Q |
118 |
gaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattc |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41453256 |
gaagattttgaaaaagcatttgccaggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattc |
41453355 |
T |
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| Q |
218 |
aatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgttaa |
275 |
Q |
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| T |
41453356 |
aatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgttaa |
41453413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 273
Target Start/End: Original strand, 41441971 - 41442146
Alignment:
| Q |
100 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatat--c |
197 |
Q |
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| T |
41441971 |
aaaaatccaggaagagtggaggattctggagaagcatttgccgggtgagtttagtattcgtgacacaaaatagcttgtaatatcttcaatgtcatatgac |
41442070 |
T |
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| Q |
198 |
acatatcacgattagtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgtt |
273 |
Q |
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| T |
41442071 |
tcatatcacatttagaattcgatttaccttttcgagccaatggactttactatatgggttgtattcaatcattgtt |
41442146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 111 - 275
Target Start/End: Original strand, 41426000 - 41426164
Alignment:
| Q |
111 |
aagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgatt |
210 |
Q |
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||||||||||||||||| | ||||| ||||||||||||||| | |||||| |||||||| ||||| ||| ||||| |||| |||||||||||||| || |
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| T |
41426000 |
aagagtggaagattttggagaagcacttgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtaatatcacatatcacattt |
41426099 |
T |
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| Q |
211 |
agtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgttaa |
275 |
Q |
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| T |
41426100 |
agtatcaattttcctttttcgagctgatggactttaacgtatagggtatatccaatcattgttaa |
41426164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 41431446 - 41431496
Alignment:
| Q |
132 |
agcatttgccgggtgagtttggtattctttatactaaatagcttgtaatat |
182 |
Q |
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| T |
41431446 |
agcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatat |
41431496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 275
Target Start/End: Original strand, 33369667 - 33369842
Alignment:
| Q |
100 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac |
199 |
Q |
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| T |
33369667 |
aaaaatccaggaagagtggaagattttggaggagcattttccgggcgagtttagtattcttgttgctaaatagcttgtaatattttccatgccatattac |
33369766 |
T |
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| Q |
200 |
atatcacgattagtattcaatttacttttttgaggttatggacttcaccatatgggttgtatccaatcattgttaa |
275 |
Q |
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| T |
33369767 |
agatcacatttactatccaatttactttttcgagctgacggacttaaccatatgggttgtatccaatcgttgttaa |
33369842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 33363164 - 33363364
Alignment:
| Q |
27 |
tcagttctgatcttaattatatggatttacatatcacttatttcctcagcaaaacccaa---gttgggctagaaagaaaaatccaaaaagagtggaagat |
123 |
Q |
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| T |
33363164 |
tcagttctaatcttaattatatggatttatatattacctatttcctaagcagaatccgaagagttgggctaaaaa----aatccaggaagagtggaggat |
33363259 |
T |
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| Q |
124 |
tttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattcaattta |
223 |
Q |
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|||| | |||||||||||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||| |
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| T |
33363260 |
tttggaggagcatttgccgggtgagtttagtattcctgatactaaatagcttgtaatattttcaatgtcatattgcctatcacatttagtattcaattta |
33363359 |
T |
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| Q |
224 |
ctttt |
228 |
Q |
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|||| |
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| T |
33363360 |
atttt |
33363364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 267
Target Start/End: Complemental strand, 7763490 - 7763254
Alignment:
| Q |
29 |
agttctgatcttaattatatggatttacatatcacttatttcctcagcaaaacccaag---ttgggctagaaagaaaaatccaaaaagagtggaagattt |
125 |
Q |
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|||||||||||| ||||||||||||||| ||| || |||||||| |||| || |||| |||||||| ||| |||||| ||||||||| ||||| |
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| T |
7763490 |
agttctgatcttgattatatggatttacctataacctatttcctgagcagaatccaaagaattgggctaaaaa----aatccaggaagagtggaggattt |
7763395 |
T |
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| Q |
126 |
tgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcacatatcacgattagtattcaatttact |
225 |
Q |
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|| | ||||||||||||||||||| | |||||||| |||| ||||| |||||| ||||||| ||||||||||||| ||||| |||||| |||||| | |
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| T |
7763394 |
tggagaagcatttgccgggtgagtctagtattcttgatacgaaatatcttgtactattttccatgtcatatcacacatcacacgtagtatccaattttc- |
7763296 |
T |
|
| Q |
226 |
tttttgaggttatggacttcaccatatgggttgtatccaatc |
267 |
Q |
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| T |
7763295 |
tttttcagctgatggactttaccatatgggttgcatccaatc |
7763254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 5479 - 5580
Alignment:
| Q |
100 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac |
199 |
Q |
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| T |
5479 |
aaaaatccaggaagagtggaagattttggagaatcacgtgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtcatatcac |
5578 |
T |
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| Q |
200 |
at |
201 |
Q |
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|| |
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| T |
5579 |
at |
5580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 17979 - 17878
Alignment:
| Q |
100 |
aaaaatccaaaaagagtggaagattttgaaaaagcatttgccgggtgagtttggtattctttatactaaatagcttgtaatattttcgatgtcatatcac |
199 |
Q |
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||||||||| ||||||||||||||||| | || || |||||||||||||| | |||||| |||||||| ||||| ||| ||||| |||||||||||| |
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| T |
17979 |
aaaaatccaggaagagtggaagattttggagaatcacgtgccgggtgagtttagcattcttgttactaaattgcttgaaattttttccatgtcatatcac |
17880 |
T |
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| Q |
200 |
at |
201 |
Q |
| |
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|| |
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|
| T |
17879 |
at |
17878 |
T |
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