View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18423_low_1 (Length: 254)
Name: NF18423_low_1
Description: NF18423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18423_low_1 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 46933493 - 46933240
Alignment:
| Q |
1 |
ttgagtgttgcatatttttctcaactccttccaaagaggtgcaactggtatgaaagcaagactataatgctcgtggttgagaaccgacacagattgtgga |
100 |
Q |
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| T |
46933493 |
ttgagtgttgcatatttttctcaattccttccaaagaggtgcaactggtatgaaagcaagactataatgctcgtggttgagaaccgacacagattgtgga |
46933394 |
T |
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| Q |
101 |
atggttctattagacaagaactggtcattggtcagaagcacctcctttgccatgttggctgaggagacgacgacagtggttattcggccaaacttgagac |
200 |
Q |
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| T |
46933393 |
atggttctattagacaagaactggtcattggtcagaagcacctcctttgccatgttggctgaggagacgacgacagtggttattcggccaaacttgagac |
46933294 |
T |
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| Q |
201 |
ttattatagaaccatgaatctttgtaagattggctaaggatttgtgaggttttt |
254 |
Q |
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| T |
46933293 |
ttattatagaaccatgaatctttgtaagattggctaaggatttgtgaggttttt |
46933240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 46926628 - 46926375
Alignment:
| Q |
1 |
ttgagtgttgcatatttttctcaactccttccaaagaggtgcaactggtatgaaagcaagactataatgctcgtggttgagaaccgacacagattgtgga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| || || ||||||||||||||||| ||||| ||||||||||| ||||||| ||| || |
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| T |
46926628 |
ttgagtgttgcatatttttctcaattccttccaaagtggtgaaatgggcatgaaagcaagactatactgctcatggttgagaactgacacagtttgaggt |
46926529 |
T |
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| Q |
101 |
atggttctattagacaagaactggtcattggtcagaagcacctcctttgccatgttggctgaggagacgacgacagtggttattcggccaaacttgagac |
200 |
Q |
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| T |
46926528 |
atgtttctctttgacaagaacttgtcattggttaggagaacctctttagccattgttgctgaggagataacaatagtggttatttggccaaacttgagac |
46926429 |
T |
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| Q |
201 |
ttattatagaaccatgaatctttgtaagattggctaaggatttgtgaggttttt |
254 |
Q |
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| T |
46926428 |
tcattaaagggccatgaattttcgctagcttggccaatgacttgtgaggttttt |
46926375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 11107430 - 11107567
Alignment:
| Q |
1 |
ttgagtgttgcatatttttctcaactccttccaaagaggtgcaactggtatgaaagcaagactataatgctcgtggttgagaaccgacacagattgtgga |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| || ||| |||| ||||||||||| || || ||||||||||| ||||||||||||||| |
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| T |
11107430 |
ttgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggtgtgaatgcaagactatattggtcatggttgagaactgacacagattgtgga |
11107529 |
T |
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| Q |
101 |
atggttctattagacaagaactggtcattggtcagaag |
138 |
Q |
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| T |
11107530 |
acagtcctatttgacaagaatttgtcattggtgagaag |
11107567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 2869 - 3006
Alignment:
| Q |
1 |
ttgagtgttgcatatttttctcaactccttccaaagaggtgcaactggtatgaaagcaagactataatgctcgtggttgagaaccgacacagattgtgga |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| || ||| |||| ||||||||||| || || ||||||||||| ||||||||||||||| |
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| T |
2869 |
ttgagtgttgcatatttttctcaattccttccaaagaggtgaaatgggtgtgaatgcaagactatattggtcatggttgagaactgacacagattgtgga |
2968 |
T |
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| Q |
101 |
atggttctattagacaagaactggtcattggtcagaag |
138 |
Q |
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| T |
2969 |
acagtcctatttgacaagaatttgtcattggtgagaag |
3006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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