View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18424_high_3 (Length: 315)

Name: NF18424_high_3
Description: NF18424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18424_high_3
NF18424_high_3
[»] chr7 (5 HSPs)
chr7 (192-298)||(38701232-38701338)
chr7 (96-194)||(19883466-19883564)
chr7 (93-194)||(6232214-6232316)
chr7 (93-194)||(48888187-48888288)
chr7 (93-194)||(44346486-44346587)
[»] chr4 (4 HSPs)
chr4 (87-193)||(55329158-55329264)
chr4 (93-194)||(18848061-18848162)
chr4 (93-193)||(42111004-42111104)
chr4 (96-193)||(55353569-55353666)
[»] chr8 (4 HSPs)
chr8 (95-194)||(42202696-42202795)
chr8 (93-191)||(44684481-44684579)
chr8 (106-184)||(25967835-25967913)
chr8 (135-184)||(3578036-3578085)
[»] chr6 (1 HSPs)
chr6 (93-194)||(380660-380762)
[»] chr3 (1 HSPs)
chr3 (93-194)||(51361279-51361380)
[»] chr5 (4 HSPs)
chr5 (97-194)||(2756301-2756398)
chr5 (93-194)||(3678231-3678331)
chr5 (93-187)||(3761010-3761104)
chr5 (94-194)||(42628995-42629095)
[»] scaffold0691 (1 HSPs)
scaffold0691 (93-193)||(1186-1286)
[»] chr2 (3 HSPs)
chr2 (126-194)||(38971055-38971123)
chr2 (144-187)||(16080465-16080508)
chr2 (188-244)||(10239242-10239298)
[»] chr1 (1 HSPs)
chr1 (128-187)||(13155021-13155080)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 38701232 - 38701338
Alignment:
Q  192 ctataaataaacctctaaatatttaccctttacaaactggatggatctaagagtgcaattcttaagccaagactacaaccaaactacttttcatacaaag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38701232 ctataaataaacctctaaatatttaccctttacaaactggatggatctaagagtgcaattcttaagctaagactacaaccaaactacttttcatacaaag 38701331  T
Q  292 tcctaaa 298  Q
    |||||||    
T  38701332 tcctaaa 38701338  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 19883466 - 19883564
Alignment:
Q  96 agtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtcta 194  Q
    |||||| ||||||||||||||| ||||  |||||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19883466 agtcccggacacctctaaaactaccccaactatctcaataaacattccttggggttccaacaccactcgtaatagaggcacggaggactctttagtcta 19883564  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 6232316 - 6232214
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcct-atctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagt 191  Q
    ||||||||| |||||||||||||||||||| | | |||||| |||||| || ||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  6232316 aaaagtcccggacacctctaaaactgccccacattatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagt 6232217  T
Q  192 cta 194  Q
    |||    
T  6232216 cta 6232214  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 48888288 - 48888187
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 192  Q
    ||||||||| |||||||||| |||| |||| || ||||||  |  || || |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  48888288 aaaagtcccggacacctctagaactaccccaccaatctcaaaagacattccttggggttccaacaccactcgtaatagaggcaaggaggactctttagtc 48888189  T
Q  193 ta 194  Q
    ||    
T  48888188 ta 48888187  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 44346587 - 44346486
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 192  Q
    |||||||||| |||||||| ||||| |||| |||| | ||  | ||| || ||||||||||| ||||||| |||| ||||||| |||||||| |||||||    
T  44346587 aaaagtccctaacacctctgaaacttccccacctaacgcaaaaggcattctttggggttccagcaccacttgtaaaagaggcaaggaggacttttaagtc 44346488  T
Q  193 ta 194  Q
    ||    
T  44346487 ta 44346486  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 55329264 - 55329158
Alignment:
Q  87 acaggaaaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactct 186  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||| |||||| || ||| |||||||||||||||||||||||||||| |||| |||||    
T  55329264 acaggaaaaagtcacggacacctctaaaactgccccacctatctcaataagcattccttgaggttccaacaccactcgtaatagaggcaaggagaactct 55329165  T
Q  187 taagtct 193  Q
    |||||||    
T  55329164 taagtct 55329158  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 18848162 - 18848061
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 192  Q
    ||||||||| ||||||||||||||| ||||  |||||||| || ||| || |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  18848162 aaaagtcccggacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcgtaatagaggcagggaggacttttaagtc 18848063  T
Q  193 ta 194  Q
    ||    
T  18848062 ta 18848061  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 42111004 - 42111104
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 192  Q
    ||||||||| ||||||||||||||| |||| ||| ||  || ||||| || ||||||||||||||||||||  || |||||||  |||||||||||||||    
T  42111004 aaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcaaaaaagaggcagtgaggactcttaagtc 42111103  T
Q  193 t 193  Q
    |    
T  42111104 t 42111104  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 55353666 - 55353569
Alignment:
Q  96 agtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtct 193  Q
    |||||||| ||||||| ||||| |||| |||||| ||  | ||| |  ||||||||||| ||||| |||||| ||||||| |||||||| ||||||||    
T  55353666 agtccctgccacctctgaaactaccccacctatcgcaaaaggcatttcttggggttccagcaccaatcgtaaaagaggcaaggaggacttttaagtct 55353569  T

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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 42202795 - 42202696
Alignment:
Q  95 aagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtcta 194  Q
    ||||||| ||||||||||||||||||||  |||||||| |||||| ||  | ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42202795 aagtcccagacacctctaaaactgccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 42202696  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 44684579 - 44684481
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagt 191  Q
    ||||||||| ||||||||||||||| |||| ||| ||  || ||||| || |||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  44684579 aaaagtcccagacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcataaaagaggcagggaggactcttaagt 44684481  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 25967835 - 25967913
Alignment:
Q  106 acctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggact 184  Q
    |||||||||||||||||  |||||| |  || ||||| ||||||||||| | |||||||||| ||||||| ||||||||    
T  25967835 acctctaaaactgcccccgctatcttaacaaacactctttggggttccagctccactcgtaaaagaggcaaggaggact 25967913  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 3578036 - 3578085
Alignment:
Q  135 aagcactcattggggttccaacaccactcgtaatagaggcacggaggact 184  Q
    |||||| | |||||||||||||||||||||||| |||||||  |||||||    
T  3578036 aagcacgctttggggttccaacaccactcgtaaaagaggcaaagaggact 3578085  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 380660 - 380762
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcct-atctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagt 191  Q
    ||||||||| |||||||||||||||||||| | | |||||| |||||| || ||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  380660 aaaagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagt 380759  T
Q  192 cta 194  Q
    |||    
T  380760 cta 380762  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 51361380 - 51361279
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 192  Q
    ||||||||||||||||||||||||| ||||  |||||||| || ||| || |||||||||||||||||||| ||||||||||| |||| ||| || ||||    
T  51361380 aaaagtccctgacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcataatagaggcagggagaacttttgagtc 51361281  T
Q  193 ta 194  Q
    ||    
T  51361280 ta 51361279  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 2756301 - 2756398
Alignment:
Q  97 gtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtcta 194  Q
    ||||| ||| ||||||||||| ||||  |||||||||||| || |  |||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  2756301 gtcccggacgcctctaaaactaccccaactatctcagtaaacatttcttggggttccaacaccactcgtaataaaggcacggaggcctctttagtcta 2756398  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 3678231 - 3678331
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 192  Q
    ||||||||  |||||||||||||||||||  ||||||| | |||||| ||  |||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  3678231 aaaagtccaggacacctctaaaactgccca-cctatcttaataagcattcgatggggttccaacacaacttgtaatagaggcaaggaggactcttaagtc 3678329  T
Q  193 ta 194  Q
    ||    
T  3678330 ta 3678331  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 3761010 - 3761104
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactctt 187  Q
    |||||||||  |||||||||||||| ||||  |||| ||||||| || || ||||||||| |||| ||||||||||||||||| |||| ||||||    
T  3761010 aaaagtcccaaacacctctaaaactaccccagctatatcagtaaacattccttggggttcaaacagcactcgtaatagaggcagggagaactctt 3761104  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 42628995 - 42629095
Alignment:
Q  94 aaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtct 193  Q
    |||||||| ||| ||||||||||| ||||  ||||||||| |  || || |||||||||| ||||||||| ||||||||||| |||||||| || |||||    
T  42628995 aaagtcccggacgcctctaaaactaccccaactatctcagaagacattccttggggttccgacaccactcataatagaggcagggaggacttttcagtct 42629094  T
Q  194 a 194  Q
    |    
T  42629095 a 42629095  T

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Target: scaffold0691 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 1286 - 1186
Alignment:
Q  93 aaaagtccctgacacctctaaaactgcccctcctatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtc 192  Q
    ||||||||| ||||||||||||||| |||| ||| ||  || ||||| || ||||| |||||||||||||| ||| ||||||| ||||||||||||||||    
T  1286 aaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttgggcttccaacaccactcataaaagaggcagggaggactcttaagtc 1187  T
Q  193 t 193  Q
    |    
T  1186 t 1186  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 38971123 - 38971055
Alignment:
Q  126 tatctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactcttaagtcta 194  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  38971123 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtcta 38971055  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 16080508 - 16080465
Alignment:
Q  144 ttggggttccaacaccactcgtaatagaggcacggaggactctt 187  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||    
T  16080508 ttggggttccaacaccactcataaaagaggcaaggaggactctt 16080465  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 10239242 - 10239298
Alignment:
Q  188 aagtctataaataaacctctaaatatttaccctttacaaactggatggatctaagag 244  Q
    |||||| |||||||| |||| |||||||||||| | ||||  |||||||||||||||    
T  10239242 aagtctctaaataaagctctcaatatttaccctgtgcaaatcggatggatctaagag 10239298  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 13155080 - 13155021
Alignment:
Q  128 tctcagtaagcactcattggggttccaacaccactcgtaatagaggcacggaggactctt 187  Q
    ||||||||| || || || |||||| |||||||||||||||||||||| | |||||||||    
T  13155080 tctcagtaaacattctttagggttcaaacaccactcgtaatagaggcaagtaggactctt 13155021  T

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