View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18424_low_2 (Length: 555)

Name: NF18424_low_2
Description: NF18424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18424_low_2
NF18424_low_2
[»] chr2 (4 HSPs)
chr2 (1-200)||(22996307-22996505)
chr2 (354-508)||(22996034-22996188)
chr2 (251-317)||(22996192-22996256)
chr2 (133-198)||(17564604-17564668)
[»] chr3 (5 HSPs)
chr3 (47-170)||(11514459-11514578)
chr3 (47-198)||(15552626-15552777)
chr3 (47-168)||(15648307-15648422)
chr3 (62-194)||(21317940-21318071)
chr3 (62-126)||(16793735-16793798)
[»] chr6 (2 HSPs)
chr6 (62-171)||(31126740-31126849)
chr6 (54-139)||(20462561-20462646)
[»] chr7 (3 HSPs)
chr7 (62-198)||(18360984-18361119)
chr7 (63-173)||(11571671-11571779)
chr7 (143-198)||(9763416-9763471)
[»] scaffold0040 (1 HSPs)
scaffold0040 (47-194)||(3329-3474)
[»] chr8 (1 HSPs)
chr8 (62-171)||(23191970-23192079)
[»] chr1 (2 HSPs)
chr1 (62-171)||(18516523-18516632)
chr1 (84-126)||(20109296-20109338)
[»] chr4 (4 HSPs)
chr4 (84-198)||(10327720-10327834)
chr4 (84-198)||(14356558-14356668)
chr4 (131-171)||(13892502-13892542)
chr4 (86-171)||(18776673-18776756)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 22996505 - 22996307
Alignment:
Q  1 tatctattgatgtaagttattaataatgaataaatccaaataacttattcattttaagtacaaaaacgtcacttagaaataattcacatgaaatccaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||    
T  22996505 tatctattgatgtaagttattaataatgaataaatccaaataacttattcatct-aagtacaaaaacgtcactcagaaataattcacatgaaatccaaag 22996407  T
Q  101 actaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagagcctaaatgttaatatgtcttactcccccttttgtcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22996406 actaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagagcctaaatgttaatatgtcttactcccccttttgtcacc 22996307  T

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Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 354 - 508
Target Start/End: Complemental strand, 22996188 - 22996034
Alignment:
Q  354 atcattaagtattagaagcagtnnnnnnngaaacacagataataaaaactaaactgcaactaagtctgatgttgtttcttcatcatttcaagaagagtag 453  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22996188 atcattaagtattagaagcagtaaaaaaagaaacacagataataaaaactaaactgcaactaagtctgatgttgtttcttcatcatttcaagaagagtag 22996089  T
Q  454 caatgccattcttaatctttgattgctcagccatggtttcctcatgttgtttctg 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22996088 caatgccattcttaatctttgattgctcagccatggtttcctcatgctgtttctg 22996034  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 22996256 - 22996192
Alignment:
Q  251 cattaatatttctagcatatcagagaaaaaataacatatcagatgcaaaactaaaatcaatacacaa 317  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  22996256 cattaatatttctagcatatcagagaaaaaataac--atcagatgcaaaactaaaatcaatacacaa 22996192  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 17564668 - 17564604
Alignment:
Q  133 aattttaatcttaatttagtggactcagagcctaaatgttaatatgtcttactcccccttttgtca 198  Q
    ||||||| | |||| |||||||||| |||||||||||| | |||||||||||| ||||||||||||    
T  17564668 aattttatttttaacttagtggactgagagcctaaatgcttatatgtcttact-ccccttttgtca 17564604  T

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Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 11514459 - 11514578
Alignment:
Q  47 attcattttaagtacaaaaacgtcacttagaaataattcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaa 146  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    ||||    
T  11514459 attcattttaagcataaaaacgtcacttagaattaattcacatgaaatccaaagactaagagatgagaagaaggttctcctaaattgatttt----ttaa 11514554  T
Q  147 tttagtggactcagagcctaaatg 170  Q
    ||||||||||| ||||||||||||    
T  11514555 tttagtggacttagagcctaaatg 11514578  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 15552626 - 15552777
Alignment:
Q  47 attcattttaagtacaaaaacgtcacttagaaataattcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaa 146  Q
    ||||||||| || |||||||||||||| |||||||||||||||| || | ||||||||| ||||||||| ||||||||  |||||||||||||   ||||    
T  15552626 attcatttttagcacaaaaacgtcactcagaaataattcacatgtaaacgaaagactaaaagatgagaataaggttcttgaaaattaatttta--tttaa 15552723  T
Q  147 tttagtggactcagagcctaaatgt--taatatgtcttactcccccttttgtca 198  Q
    |||||||||||||||||||||||||  | |||| ||||||||||| ||||||||    
T  15552724 tttagtggactcagagcctaaatgtcattatatatcttactccccgttttgtca 15552777  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 15648307 - 15648422
Alignment:
Q  47 attcattttaagtacaaaaacgtcacttagaaataattcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaa 146  Q
    ||||||||| || |||||||| ||||| |||||||||||||||| |||| ||||||||| ||||||||| ||||||||  ||||||||||      |||     
T  15648307 attcatttttagcacaaaaacatcactcagaaataattcacatgtaatcgaaagactaaaagatgagaataaggttcttgaaaattaatt------ttat 15648400  T
Q  147 tttagtggactcagagcctaaa 168  Q
    ||||||||||||||||||||||    
T  15648401 tttagtggactcagagcctaaa 15648422  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 21317940 - 21318071
Alignment:
Q  62 aaaaacgtcacttagaaataatt-cacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcag 160  Q
    ||||| |||||| | |||||||| ||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||| | |||||||||| ||||     
T  21317940 aaaaatgtcactcaaaaataatttcacatgaaa-ccagagactaagagatgagaaggaggttctcctaaattaattttaatgtaaatttagtgggctcat 21318038  T
Q  161 agcctaaatgttaatatgtcttactccccctttt 194  Q
    || ||||||| || ||| || |||||||||||||    
T  21318039 agtctaaatg-tactatatcctactccccctttt 21318071  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 16793798 - 16793735
Alignment:
Q  62 aaaaacgtcacttagaaataattcacatgaaatccaaagactaagagatgagaagaaggttctcc 126  Q
    |||||||||||| ||||| |  |||||||||||| |||||||||||||||||||| || ||||||    
T  16793798 aaaaacgtcactcagaaaaatctcacatgaaatc-aaagactaagagatgagaagcagattctcc 16793735  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 31126849 - 31126740
Alignment:
Q  62 aaaaacgtcacttagaaataattcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcaga 161  Q
    ||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31126849 aaaaacgtccctcagaaataattcacatcaaatccagagactaagagatgagaagaaggttctcctaaattaattttaatcttaatttagtggactcaga 31126750  T
Q  162 gcctaaatgt 171  Q
      ||||||||    
T  31126749 atctaaatgt 31126740  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 20462561 - 20462646
Alignment:
Q  54 ttaagtacaaaaacgtcacttagaaataattcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaatttta 139  Q
    ||||| |||||||||||||| | || |||||| ||||||||||||||||||||||||  ||||||  |||||| ||||||||||||    
T  20462561 ttaagcacaaaaacgtcactcaaaattaattcgcatgaaatccaaagactaagagataggaagaaaattctcctaaattaatttta 20462646  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 62 - 198
Target Start/End: Complemental strand, 18361119 - 18360984
Alignment:
Q  62 aaaaacgtcacttagaaataattcacatgaaatccaaagactaagagatgagaagaaggttct-ccaaaattaattttaatcttaatttagtggactcag 160  Q
    |||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||| || |||||| ||||||| ||||||||||||||| ||    
T  18361119 aaaaacgtcactcagaaatacttcacatgaaatccagagactaagagatgagaagaaagttctccctaaattagttttaattttaatttagtggacttag 18361020  T
Q  161 agcctaaatgttaatatgtcttactcccccttttgtca 198  Q
    |||||||||| || ||| ||||||| ||||||||||||    
T  18361019 agcctaaatg-tactatatcttact-ccccttttgtca 18360984  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 11571779 - 11571671
Alignment:
Q  63 aaaacgtcacttagaaataattcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagag 162  Q
    ||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||   |||||||||||||||| |||    
T  11571779 aaaacgtcattcagaattaattcacatgaaatccagagactaagagatgagaagaagattctcctaaactaatttta--tttaatttagtggactcggag 11571682  T
Q  163 cctaaatgtta 173  Q
    |||||||||||    
T  11571681 cctaaatgtta 11571671  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 9763416 - 9763471
Alignment:
Q  143 ttaatttagtggactcagagcctaaatgttaatatgtcttactcccccttttgtca 198  Q
    |||| ||||||||||||||||||  ||| || ||||||||||||| ||||||||||    
T  9763416 ttaacttagtggactcagagcctggatgctattatgtcttactcctccttttgtca 9763471  T

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Target: scaffold0040 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 47 - 194
Target Start/End: Complemental strand, 3474 - 3329
Alignment:
Q  47 attcattttaagtacaaaaacgtcacttagaaataatt-cacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatctta 145  Q
    ||||||||||| | ||||||||||||| | |||||||| ||||||||||  | |||||||||||||||||| ||||||||| |||||||||||||| |||    
T  3474 attcattttaa-tccaaaaacgtcactcaaaaataatttcacatgaaatt-agagactaagagatgagaagcaggttctcctaaattaattttaatgtta 3377  T
Q  146 atttagtggactcagagcctaaatgttaatatgtcttactccccctttt 194  Q
    ||||||||| ||||  ||||||||| || | | ||||||||||||||||    
T  3376 atttagtgggctcaatgcctaaatg-tattgtatcttactccccctttt 3329  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 23192079 - 23191970
Alignment:
Q  62 aaaaacgtcacttagaaataattcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcaga 161  Q
    ||||| |||||| ||||||| |  ||||||||| || |||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||  |||||    
T  23192079 aaaaatgtcactcagaaatagtatacatgaaattcagagactaagagatgagaagaatgttctcctaaattaattttaactttaatttagtgggttcaga 23191980  T
Q  162 gcctaaatgt 171  Q
    ||||||||||    
T  23191979 gcctaaatgt 23191970  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 18516632 - 18516523
Alignment:
Q  62 aaaaacgtcacttagaaataat-tcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcag 160  Q
    |||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||  ||||||||| ||||||||||||||  ||||||||| | |||||    
T  18516632 aaaaacgtcactcataaataatctcacatcaaatc-aaagactaagagatgagaaccaggttctcctaaattaattttaattctaatttagttggctcag 18516534  T
Q  161 agcctaaatgt 171  Q
    |||||||||||    
T  18516533 agcctaaatgt 18516523  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 20109338 - 20109296
Alignment:
Q  84 tcacatgaaatccaaagactaagagatgagaagaaggttctcc 126  Q
    |||||||| ||| |||||||||||||||||||| |||||||||    
T  20109338 tcacatgatatcaaaagactaagagatgagaaggaggttctcc 20109296  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 10327834 - 10327720
Alignment:
Q  84 tcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagagcctaaatg--ttaatatgtct 181  Q
    |||||| | ||||| || ||||||||||||||||||||| ||| ||||||||||||   |||| |||| ||||||||||||||||||   | ||||||||    
T  10327834 tcacattatatccagaggctaagagatgagaagaaggttttcctaaattaatttta--tttaacttagcggactcagagcctaaatgccattatatgtct 10327737  T
Q  182 tactcccccttttgtca 198  Q
    |||||||||||||||||    
T  10327736 tactcccccttttgtca 10327720  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 14356668 - 14356558
Alignment:
Q  84 tcacatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagagcctaaatgttaatatgtctta 183  Q
    |||||||||||| |||||||| ||||||||||  ||||||||| |||||||||||||  ||||||||||||||||||| |||||||| || |||||| ||    
T  14356668 tcacatgaaatc-aaagactaggagatgagaaacaggttctcctaaattaattttaa-gttaatttagtggactcagaacctaaatg-tactatgtc-ta 14356573  T
Q  184 ctcccccttttgtca 198  Q
    |||||| ||||||||    
T  14356572 ctccccattttgtca 14356558  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 13892502 - 13892542
Alignment:
Q  131 ttaattttaatcttaatttagtggactcagagcctaaatgt 171  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  13892502 ttaattttaattttaatttagtggactcagggcctaaatgt 13892542  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 18776673 - 18776756
Alignment:
Q  86 acatgaaatccaaagactaagagatgagaagaaggttctccaaaattaattttaatcttaatttagtggactcagagcctaaatgt 171  Q
    |||||||||| |||||||||||||| ||||  | ||||||| |||||||||||||  |||||||||||| || | | |||||||||    
T  18776673 acatgaaatc-aaagactaagagataagaaacacgttctcctaaattaattttaa-gttaatttagtgggcttacaacctaaatgt 18776756  T

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