View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18424_low_4 (Length: 375)

Name: NF18424_low_4
Description: NF18424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18424_low_4
NF18424_low_4
[»] chr1 (4 HSPs)
chr1 (18-328)||(43989880-43990190)
chr1 (36-88)||(33541854-33541906)
chr1 (35-90)||(41195339-41195394)
chr1 (50-90)||(44217295-44217335)
[»] chr6 (3 HSPs)
chr6 (46-89)||(9604741-9604784)
chr6 (50-90)||(6538387-6538427)
chr6 (36-90)||(35069432-35069486)
[»] chr7 (2 HSPs)
chr7 (36-90)||(38500064-38500118)
chr7 (50-90)||(45004636-45004676)
[»] chr3 (3 HSPs)
chr3 (17-90)||(29002960-29003030)
chr3 (36-89)||(30956772-30956825)
chr3 (36-89)||(30972584-30972637)
[»] chr8 (2 HSPs)
chr8 (18-86)||(9130441-9130506)
chr8 (36-90)||(40981000-40981054)
[»] chr5 (3 HSPs)
chr5 (36-90)||(9202884-9202938)
chr5 (36-89)||(24030548-24030601)
chr5 (49-89)||(32021968-32022008)
[»] chr2 (3 HSPs)
chr2 (40-90)||(5745560-5745610)
chr2 (36-90)||(15757812-15757866)
chr2 (36-90)||(41407171-41407225)
[»] chr4 (2 HSPs)
chr4 (36-89)||(44863098-44863151)
chr4 (36-92)||(27029-27085)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 43990190 - 43989880
Alignment:
Q  18 cttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagactcggtctttatgtgttgcttcatac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990190 cttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagactcggtctttatgtgttgcttcatac 43990091  T
Q  118 atgtaatcactgtgacaatggattatgtgcttgacagcaatattacataattgttttcttttttaacaggttaattaatattatatagtggttaaaaata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990090 atgtaatcactgtgacaatggattatgtgcttgacagcaatattacataattgttttcttttttaacaggttaattaatattatatagtggttaaaaata 43989991  T
Q  218 tctagataaagaatgatatttgattccttaccctggataaggtttggtctcaatttgaatatgacaatatttgatcttgtagctggagagcaaattgggt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989990 tctagataaagaatgatatttgattccttaccctggataaggtttggtctcaatttgaatatgacaatatttgatcttgtagctggagagcaaattgggt 43989891  T
Q  318 gtgtgatgtta 328  Q
    |||||||||||    
T  43989890 gtgtgatgtta 43989880  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 33541854 - 33541906
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaac 88  Q
    ||||||||| |||| |||||||||||||||||||||| | | |||||||||||    
T  33541854 ttatcatgataaacacttgtgctataaactgcaaataagttgtttatccaaac 33541906  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 41195339 - 41195394
Alignment:
Q  35 attatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||| || || |||||||||||||| ||||||||| | |||||||||||||||    
T  41195339 attatcaggataagcgcttgtgctataagctgcaaataagttatttatccaaacag 41195394  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 44217295 - 44217335
Alignment:
Q  50 gcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  44217295 gcttgtgctataagctgcaaatatgcaatttatccaaacag 44217335  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 9604784 - 9604741
Alignment:
Q  46 aaacgcttgtgctataaactgcaaatacgctatttatccaaaca 89  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  9604784 aaacgcttgtgctataaactgcaaataagctgtttatccaaaca 9604741  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 6538427 - 6538387
Alignment:
Q  50 gcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  6538427 gcttgtgctataagctgcaaataagctatttatccaaacag 6538387  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 35069486 - 35069432
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||||| ||||||||||||||||| ||||||||| | | |||||| ||||||    
T  35069486 ttatcatgataaacgcttgtgctataagctgcaaataagttgtttatcaaaacag 35069432  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 38500064 - 38500118
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||||| || |||||||||||||||||||||||| ||| |||||| ||||||    
T  38500064 ttatcatgataagcgcttgtgctataaactgcaaataagctgtttatctaaacag 38500118  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 45004676 - 45004636
Alignment:
Q  50 gcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  45004676 gcttgtgctataaactgcaaataagttatttatccaaacag 45004636  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 29002960 - 29003030
Alignment:
Q  17 acttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||||||||||||||||   ||||| |||||||| | |||||| |||||||||   |||||||||||||||    
T  29002960 acttatacataagtgtttat---catgataaacgcttttactataagctgcaaataaattatttatccaaacag 29003030  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 30956772 - 30956825
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 89  Q
    ||||||||| || | |||||||||||| ||||||||| ||| ||||||||||||    
T  30956772 ttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 30972584 - 30972637
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 89  Q
    ||||||||| || | |||||||||||| ||||||||| ||| ||||||||||||    
T  30972584 ttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 9130441 - 9130506
Alignment:
Q  18 cttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaa 86  Q
    |||||||||||||| |||| || ||||| |   |||||||||||| ||||||||| |||||||||||||    
T  9130441 cttatacataagtgattatcatgatgacca---cttgtgctataagctgcaaataagctatttatccaa 9130506  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 40981054 - 40981000
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    |||||| || || |||||||||||||| ||||||||| ||| |||||||||||||    
T  40981054 ttatcaagataagcgcttgtgctataagctgcaaataagctgtttatccaaacag 40981000  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 9202884 - 9202938
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||||| |||| |||||||||||| ||||||||| | | |||||||||||||    
T  9202884 ttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaacag 9202938  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 24030548 - 24030601
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 89  Q
    ||||||||| ||  ||||||||||||| ||||||||| ||| ||||||||||||    
T  24030548 ttatcatgataagtgcttgtgctataagctgcaaataagctgtttatccaaaca 24030601  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 32022008 - 32021968
Alignment:
Q  49 cgcttgtgctataaactgcaaatacgctatttatccaaaca 89  Q
    |||||||||||||| |||||||||  |||||||||||||||    
T  32022008 cgcttgtgctataatctgcaaataatctatttatccaaaca 32021968  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 5745560 - 5745610
Alignment:
Q  40 catgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  5745560 catgataaacgcttgtgatataagctgcaaataagctctttatccaaacag 5745610  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 15757812 - 15757866
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||||| || |||||||||||||| ||| ||||| ||| |||||||||||||    
T  15757812 ttatcatgataagcgcttgtgctataagctgaaaataagctgtttatccaaacag 15757866  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 41407225 - 41407171
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 90  Q
    ||||||||| || |||||||||||||| ||||||| | ||| |||||||||||||    
T  41407225 ttatcatgataagcgcttgtgctataagctgcaaacaagctgtttatccaaacag 41407171  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 44863098 - 44863151
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 89  Q
    ||||||||||||  ||||||||||||| ||||||||| | | ||||||||||||    
T  44863098 ttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 27029 - 27085
Alignment:
Q  36 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagac 92  Q
    ||||||||| || |||||||||||||| ||||||| | | | |||||||||||||||    
T  27029 ttatcatgataagcgcttgtgctataagctgcaaacaagatgtttatccaaacagac 27085  T

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