View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18424_low_9 (Length: 250)
Name: NF18424_low_9
Description: NF18424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18424_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 45659046 - 45658825
Alignment:
| Q |
16 |
agttcttcagtttcctcttgatctgcctgtattacaaagatttgaaactcatcaactatatgtatatagaaacaagctaaggttagaaaaatgagtgaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45659046 |
agttcttcagtttcctcttgatctgcctgtattacaaagatttgaaactcatcaactatatgtatatagaaacaagctaaggttagaaaaatgagtgaga |
45658947 |
T |
|
| Q |
116 |
tgaatgagtagaaccttaccattgtctcgataatgagagttaagttttagacaagaatagtaaagttcaaatgaaatggtgtttgtgaagaaatagctca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45658946 |
tgaatgagtagaaccttaccattgtctcgataatgagagttaagttttagacaagaatagtaaagttcaaatgaaatggtgtttgtgaagaaatagctca |
45658847 |
T |
|
| Q |
216 |
aaattgtttgcctctgtctgtg |
237 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45658846 |
aaattgtttgcctctgtctgtg |
45658825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University