View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18425_high_13 (Length: 363)
Name: NF18425_high_13
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 20605851 - 20606163
Alignment:
| Q |
1 |
actcatcgtgcttttagttgagctcgagcttctatccatttatcagtcaatatgagtaatgtcatgaggccagaagcagcatacagcaccataccatgat |
100 |
Q |
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| T |
20605851 |
actcatcgtgcttttagttgagctcgagcttctatccatttatcagtcaatatgagtaatgtcatgaggccagaagcagcatacagcaccataccatgat |
20605950 |
T |
|
| Q |
101 |
attataagttgaatttgttcttcactaggtttgtttaacatagaattaacatgacctg--aaacatactgaacttttggtaatgaatgggaactggtttt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20605951 |
attataagttgaatttgttcttcactaggtttgtttaacatagaattaacatgacctgcaaaacatactgaacttttggtaatgaatgggaactggtttt |
20606050 |
T |
|
| Q |
199 |
ttggaaatagaaatcataacatgttattaggagaaattcaaagttggtctcacttctcacagagaataaatttgcacgtgctatttggtgtggtcctcaa |
298 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20606051 |
ttggaaataga------aacatgttattaggagaaattcaaagttggtctcacttctcac--agaataaatttgcacgtgctatttggtgtggtcctcaa |
20606142 |
T |
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| Q |
299 |
agtgttttgcccattgattaa |
319 |
Q |
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||||||||||||||||||||| |
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| T |
20606143 |
agtgttttgcccattgattaa |
20606163 |
T |
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