View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18425_high_17 (Length: 305)
Name: NF18425_high_17
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 9550497 - 9550723
Alignment:
| Q |
23 |
atctctctaaaactaacatcatccaactaaggtttaaagtcaaaa--ctcttttatacctttaggataattcaatgttatatagtttgtaacttgatcta |
120 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9550497 |
atctctctaaaactatcatcatccaaataaggtttaaagtcaaaaaactcttttatacctttaggataattcaatgttatatagttcgtaacttgatcta |
9550596 |
T |
|
| Q |
121 |
tccaaaaagactaatgtaattaaaataaatcaattttaatttagtggccatttcaaaatttcattac-tttaatatccaattcctataacctaatattcc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9550597 |
tccaaaaagactaatgtaattaaaataaatcaattttaatttagtggccatttcaaaatttcattacttttaatatccaattcctataacctaatattcc |
9550696 |
T |
|
| Q |
220 |
accgactaaattagcgcttccatattt |
246 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
9550697 |
accgactaaattagcgcttccatattt |
9550723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University