View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18425_high_19 (Length: 266)
Name: NF18425_high_19
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 20879437 - 20879618
Alignment:
| Q |
69 |
agttccctgattgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgtatta |
168 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| | || | |||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
20879437 |
agttccctaattgagattgggttttcttcatctgctttgttcttatttatcgatttgcatgaaattccttaagttgtactttcatagaatttatgtatta |
20879536 |
T |
|
| Q |
169 |
ttgtgaagcaattgattgttattatttgttatcaatcggtgataaaagagaggaaagaaaaataagctttgaattgtatttg |
250 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20879537 |
ttgtgaagcaattgattgtcattatttattgtcaatcggtgatagaagagaggaaagaaaaataagttttgaattgtatttg |
20879618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 69 - 250
Target Start/End: Complemental strand, 21685795 - 21685614
Alignment:
| Q |
69 |
agttccctgattgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgtatta |
168 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| | || | |||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
21685795 |
agttccctaattgagattgggttttcttcatctgctttgttcttatttatcgatttgcatgaaattccttaagttgtactttcatagaatttatgtatta |
21685696 |
T |
|
| Q |
169 |
ttgtgaagcaattgattgttattatttgttatcaatcggtgataaaagagaggaaagaaaaataagctttgaattgtatttg |
250 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21685695 |
ttgtgaagcaattgattgtcattatttattgtcaatcggtgatagaagagaggaaagaaaaataagttttgaattgtatttg |
21685614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 22543328 - 22543501
Alignment:
| Q |
78 |
attgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgtattattgtgaagc |
177 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || | |||||||||| ||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
22543328 |
attgagatttggttttcttcatctgctttgttcttatttaccgatttccatgaaattccttaagttctattttgatagaatttatgtattattgtgaagc |
22543427 |
T |
|
| Q |
178 |
aattgattgttattatttgttatcaatcggtgataaaagagaggaaag-aaaaataagctttgaattgtatttg |
250 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22543428 |
aattgattgttattatttattgtcaatcggtgatagaagagaggaaagaaaaaataagctttgaattgtatttg |
22543501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 21116723 - 21116612
Alignment:
| Q |
78 |
attgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgt-attattgtgaag |
176 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| ||||| |||||||| || | ||||| |||||| |||||||||| | |||||| ||| |
|
|
| T |
21116723 |
attgagattgg--tttcttcatctgcttttttcttattttcctat----ttgaaattccttgaattgtagtttgatcgaatttatgtaactattgtaaag |
21116630 |
T |
|
| Q |
177 |
caattgattgttattatt |
194 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
21116629 |
caattggttgttattatt |
21116612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 43653522 - 43653411
Alignment:
| Q |
78 |
attgagattgggttttcttcatctgctttgttcttatttacctatatacatgaaattcattaagttgtactttgatagaatttatgt-attattgtgaag |
176 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| ||||| |||||||| || | ||||| |||||| |||||||||| | |||||| ||| |
|
|
| T |
43653522 |
attgagattgg--tttcttcatctgcttttttcttattttcctat----ttgaaattccttgaattgtagtttgatcgaatttatgtaactattgtaaag |
43653429 |
T |
|
| Q |
177 |
caattgattgttattatt |
194 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
43653428 |
caattggttgttattatt |
43653411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University