View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18425_high_21 (Length: 236)
Name: NF18425_high_21
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 20085640 - 20085860
Alignment:
| Q |
16 |
ataataaactgtgttacccgaacaatgttctcttcgagataatagcgaaattttcgccataggaacactatctttcannnnnnnagtaacagtttcggaa |
115 |
Q |
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| T |
20085640 |
ataataaactgtgttacccgaacaatgttctcttcgagataatagcgaaattttcgccataggaacactatctttcatttttttagtaacagtttcggaa |
20085739 |
T |
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| Q |
116 |
tctccgaggattaaaccaatttctgaatcaacaacaataactacataaaaagcatcaacaggttctggtcctgtttcatatttagcatttgaaagatccc |
215 |
Q |
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| T |
20085740 |
tctccgaggattaaaccaatttctgaatcaacaacaataactacataaaaagcatcaacaggttctggtcctgtttcatatttagcatttgaaagatccc |
20085839 |
T |
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| Q |
216 |
ataaaacagttaccttaaaat |
236 |
Q |
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| T |
20085840 |
ataaaacagttaccttaaaat |
20085860 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 36055837 - 36055745
Alignment:
| Q |
130 |
accaatttctgaatcaacaacaataactacataaaaagcatcaacaggttctggtcctgtttcatatttagcatttgaaagatcccataaaac |
222 |
Q |
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|||||||||||||||||| | ||| | |||||||| ||||||||||||| | || ||||||||| | ||||||||||||||||| ||||| |
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| T |
36055837 |
accaatttctgaatcaactaaaattgcaacataaaatccatcaacaggttcagaaccagtttcatatcttgcatttgaaagatcccaaaaaac |
36055745 |
T |
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