View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18425_high_3 (Length: 809)
Name: NF18425_high_3
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_high_3 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 754; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 1 - 790
Target Start/End: Complemental strand, 42467176 - 42466388
Alignment:
| Q |
1 |
tgatgctcgttcgacatcatatttttctcctatttgtagcttgataaataggtatgatgcaacttgttgtattttagaaaaactttctgagaatgggtca |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42467176 |
tgatgctcgtttgacatcatatttttctcctatttgtagcttgataaataggtatgatgcaacttgttgtattttagaaaaactttctgagaatgggtca |
42467077 |
T |
|
| Q |
101 |
aattattgtcaaaatggggatgcttatatggcttataatcacttgaccacatttgactttgtattggtcttgcatttgatgagaaatacgatggggataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42467076 |
aattattgtcaaaatggggatgcttatatggcttataatcacttgaccacatttgactttgtattggtcttgcatttgatgagaaatacgatggggataa |
42466977 |
T |
|
| Q |
201 |
ctgatattctttttcaagctttacaacaacaacatccaaatgtagttaatgtcaagcatatagttcgttctaccaaagcactgcttcaaaatatgagaca |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42466976 |
ctgatattctttgtcaagctttacaacaacaacatccaaatgtagttaatgtcaagcatatagttcgttctaccaaagcactgcttcaaaatatgagaca |
42466877 |
T |
|
| Q |
301 |
agatggttgggataagttgttaaagactgtgacatctttttgtgatgaaaatggtattcatgttcctaagttcgatgctccgtatgtaccaatatcacgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42466876 |
agatggttgggataagttgttaaagactgtgacatctttttgtgataaaaatggtattcatgttcctaaggtcgatgctccgtatgtaccaatatcacgg |
42466777 |
T |
|
| Q |
401 |
cgcgctcgtcgccaacaggaggatcaaatcacattaatgcagtattatagagaacaagtattttttattaccattgacaagcaaatacaagaattgaata |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42466776 |
cgcgctcgtcgccaacaggaggatcaaatcacattaatgcagtattatagagaacaagtattttttattaccattgacaagcaaatacaagaattgaata |
42466677 |
T |
|
| Q |
501 |
gcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaaggatacttaccaagcttttaacattgataatatttgcactct |
600 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42466676 |
gcaggttcagtgaccaatcaatggagttgttgactctaggctctgctttggttcctaaggatactcaccaagcttttaacattgataatatttgcactct |
42466577 |
T |
|
| Q |
601 |
tgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttcaacttcaacatttcattattgatgctcgtcaagattcaact |
700 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42466576 |
tgtagaaaaatattatcccatggatttc-atgagcaggagaagattacttcgcgatttcaacttcaacatttcattattgatgctcgtcaagattcaact |
42466478 |
T |
|
| Q |
701 |
ttgaaaagcttatcaactatccaagaattgtgtgcatgtttggcagcaacgaaaaagtcagaagtttactacttgattgatagactactc |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42466477 |
ttgaaaagcttatcaactatccaagaattgtgtgcatgtttggcagcaacgaaaaagtcagaagtttactacttgattgatagactactc |
42466388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 6 - 780
Target Start/End: Complemental strand, 42479734 - 42478960
Alignment:
| Q |
6 |
ctcgttcgacatcatatttttctcctatttgtagcttgataaataggtatgatgcaacttgttgtattttagaaaaactttctgagaatgggtcaaatta |
105 |
Q |
| |
|
||||||||| ||| ||||| || |||| |||| ||||||||| | ||||| || |||||||| | ||||||||||||| | | ||| |||| ||| |
|
|
| T |
42479734 |
ctcgttcgaggtcacattttccttctatctgtaccttgataaacatgtatggtgaaacttgttctcttttagaaaaactgaccaatgttggttcaactta |
42479635 |
T |
|
| Q |
106 |
ttgtcaaaatggggatgcttatatggcttataatcacttgaccacatttgactttgtattggtcttgcatttgatgagaaatacgatggggataactgat |
205 |
Q |
| |
|
|||||||| ||||||||||| ||| |||| | || ||||||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42479634 |
ttgtcaaagtggggatgcttctattgcttttgataacttgactacatttgaatttgtattgatcttgcatttgatgagaaatattatggggataactgat |
42479535 |
T |
|
| Q |
206 |
attctttttcaagctttacaacaacaacatccaaatgtagttaatgtcaagcatatagttcgttctaccaaagcactgcttcaaaatatgagacaagatg |
305 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||| |
|
|
| T |
42479534 |
attctttgtcaagctttacaacaacaaaatccaaatgttgttaatgtcaagcatatagttcgttctaccaaagtgctgcttcaaaacacgagacaaaatg |
42479435 |
T |
|
| Q |
306 |
gttgggataagttgttaaagactgtgacatctttttgtgatgaaaatggtattcatgttcctaagttcgatgctccgtatgtaccaatatc---acggcg |
402 |
Q |
| |
|
| ||| |||||||||||| | ||||| || |||||||||| ||||||||||| | |||||| | || | |||||||||||| ||| | | | |||| |
|
|
| T |
42479434 |
gctggagtaagttgttaaaaagtgtgatatgtttttgtgataaaaatggtattgaggttcctcaattgaaagctccgtatgtagcaagacctgcatggcg |
42479335 |
T |
|
| Q |
403 |
cgctcgtcgccaacaggaggatcaaatcacattaatgcagtattatagagaacaagtattttttattaccattgacaagcaaatacaagaattgaatagc |
502 |
Q |
| |
|
| || || |||| |||| || |||||| || ||| |||||||| ||| |||| |||| ||| |||||||||| ||| ||||||| ||||||||| |
|
|
| T |
42479334 |
ctctaatcaccaaaaggatgac---atcacaatagagcattattatagggaagaagtgttttccattgccattgacaaacaattacaagagttgaatagc |
42479238 |
T |
|
| Q |
503 |
aggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaaggatacttaccaagcttttaacattgataatatttgcactcttg |
602 |
Q |
| |
|
||||| || ||||| ||||||||||||| |||||| | | ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
42479237 |
aggtttagcgaccaagcaatggagttgttaactctaagttgtgctttggttcctaaggatacttacaaaacttttaacattgatgatatttgcactcttg |
42479138 |
T |
|
| Q |
603 |
tagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttcaacttcaacatttcattattgatgctcgtcaagattcaacttt |
702 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||| || ||||| ||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
42479137 |
tagaaaaatattatcccatggatttcaacgagcaggagaagcttaatttacgatgtcaacttcagcatttcattattgatgctcgtcaagattcaaaatt |
42479038 |
T |
|
| Q |
703 |
gaaaagcttatcaactatccaagaattgtgtgcatgtttggcagcaacgaaaaagtcagaagtttactacttgattga |
780 |
Q |
| |
|
||| | |||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
42479037 |
gaagaatttatcaactatccaagaattgtgtacatgtttggcagcaacaaaaaaatcagaagtttactgtttgattga |
42478960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 21 - 790
Target Start/End: Complemental strand, 42472461 - 42471695
Alignment:
| Q |
21 |
atttttctcctatttgtagcttgataaataggtatgatgcaacttgttgtattttagaaaaactttctgagaatgggtcaaattattgtcaaaatgggga |
120 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||| ||| ||||||||| ||| | |||||||| |||| ||||||| | ||||| ||||| ||| || |
|
|
| T |
42472461 |
atttttcttctatttgtagcttgataaggatgtacgatacaacttgttcgattcttaaaaaacttgctgatgatgggtctacttattatcaaagtggtga |
42472362 |
T |
|
| Q |
121 |
tgcttatatggcttataatcacttgaccacatttgactttgtattggtcttgcatttgatgagaaatacgatggggataactgatattctttttcaagct |
220 |
Q |
| |
|
||||| ||| ||||| | |||||||| ||||||| ||||||||| |||||||| |||||||| | | ||||||||||| || |||||| | | | | |
|
|
| T |
42472361 |
tgcttctattgcttacgacaacttgaccgcatttgagtttgtattgatcttgcatatgatgagagaaatcttggggataactcatgttctttgtgatgtt |
42472262 |
T |
|
| Q |
221 |
ttacaacaacaacatccaaatgtagttaatgtcaagcatatagttcgttctaccaaagcactgcttcaaaatatgagacaagatggttgggataagttgt |
320 |
Q |
| |
|
| |||| |||| |||| || |||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||| |
|
|
| T |
42472261 |
gtgcaactacaatgtccatatctagttaatgtcaaggccgtagttcgttctaccaaagcactgcttcaaatttttagacaagatggttgggataaattgt |
42472162 |
T |
|
| Q |
321 |
taaa-gactgtgacatctttttgtgatgaaaatggtattcatgttcctaagttcgatgctccgtatgtaccaatatcacggcgcgctcgtcgccaacagg |
419 |
Q |
| |
|
|||| ||| |||| || ||| |||| | ||| |||| | ||||| | ||| |||||||||||||| || | || ||| |||||| |||| ||| |
|
|
| T |
42472161 |
taaaagac-gtgaaatgtttctgtgcaaagcatgatattgagattcctcaattcaatgctccgtatgtagaaagaccatggcaatctcgtcaccaaaagg |
42472063 |
T |
|
| Q |
420 |
aggatcaaatcacattaatgcagtattatagagaacaagtattttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtc |
519 |
Q |
| |
|
| ||| |||||| || ||| |||| ||||| | |||| ||||||||| ||||||||| ||| ||||||| |||||||||||||| |||||||| | |
|
|
| T |
42472062 |
a---tcacatcacaatagagcattattttagagtagaagtgttttttattgtcattgacaatcaattacaagagttgaatagcaggtttagtgaccaagc |
42471966 |
T |
|
| Q |
520 |
aatggagttgttgactctaggctctgctttggttcctaaggatacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatccc |
619 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||||| || | |||||||| | |||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
42471965 |
aatggagttattaactctatgctctgctttggttcctaaggatagttgcaaagcttttgatattgatcatctttgcactcttgtagaaaaatgttatccc |
42471866 |
T |
|
| Q |
620 |
atggatttcaatgagcaggagaagattacttcacgatttcaacttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaacta |
719 |
Q |
| |
|
||||||||||| ||||||||||||||| || | | ||||||| || ||||||||||| | || ||||||||||||| |||||| | |||||||||| |
|
|
| T |
42471865 |
atggatttcaacgagcaggagaagattgatttgcaacgtcaacttaaatatttcattattcaagcccgtcaagattcaaatttgaagaatttatcaacta |
42471766 |
T |
|
| Q |
720 |
tccaagaattgtgtgcatgtttggcagcaacgaaaaagtcagaagtttactacttgattgatagactactc |
790 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| | |||| | || |||||||||||||||| ||||||||| |
|
|
| T |
42471765 |
tccaagaattgtgttcatgtttggcaggaacaagaaaggctcaaatttactacttgattgacagactactc |
42471695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 461 - 742
Target Start/End: Original strand, 33363222 - 33363503
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||| ||||||||||| || ||||| || ||||||| |||||||||||| | | ||||||| ||| ||| |
|
|
| T |
33363222 |
ttttttactaccattgacaaacaattacaagagttgaatagcagatttagtgagcaagcaatggatttgttgactctaagttgtgctttgtctccggagg |
33363321 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| || |||||||| ||||| | ||| || | |||||| ||||||||||||||||||||||| | ||| ||||||||||||| || | |||||| |
|
|
| T |
33363322 |
atggatataaagcttttgacattagcactatatgtagtcttgttgaaaaatattatcccatggattttagtgatcaggagaagattaatttgccatttca |
33363421 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttg |
742 |
Q |
| |
|
|| |||||||| || |||| |||||| || ||||||||||||| ||||||||||| |||||||| ||| |||||||| |
|
|
| T |
33363422 |
tctaaaacatttcctttttgaggctcgtgaatcatcaactttgaaaaatttatcaactattcaagaattatgttcatgtttg |
33363503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 459 - 646
Target Start/End: Complemental strand, 12868910 - 12868723
Alignment:
| Q |
459 |
tattttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaa |
558 |
Q |
| |
|
||||||||| ||||||||| || ||| ||||||| |||||||| || || ||||| || ||||||| ||||| |||||| | | ||||||| |||||| |
|
|
| T |
12868910 |
tattttttactaccattgataaacaattacaagagttgaatagtagatttagtgaggaggcaatggatttgttaactctaagttgtgctttgactcctaa |
12868811 |
T |
|
| Q |
559 |
ggatacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagatt |
646 |
Q |
| |
|
||||| ||| |||||||| | |||||| ||||||||||||||| || ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
12868810 |
ggatagttataaagcttttgatgttgatactatttgcactcttgttgataaatactatcccatggatttcaatgatcaagagaagatt |
12868723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 461 - 729
Target Start/End: Original strand, 42809159 - 42809427
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||| || |||||||| || ||||| || ||||||| |||||||||||| | | ||||||| ||| | | |
|
|
| T |
42809159 |
ttttttactaccattgacaaacaattacaagagttaaatagcagatttagtgagcaaccaatggatttgttgactctaagttgtgctttgtctccggatg |
42809258 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| | |||||||| ||||||| | ||| || |||||||| ||||||||||||||||||||||| | ||| ||||||||||||| || |||||| |
|
|
| T |
42809259 |
atggacataaagcttttgacattgacactatatgtactcttgttgaaaaatattatcccatggattttagtgatcaggagaagattaatttgtcatttca |
42809358 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaatt |
729 |
Q |
| |
|
|| ||||||| || |||| |||||| || ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
42809359 |
tctaacacatttcctttttgaggctcgtgaatcatcaactttgaaaaatttatcaactattcaagaatt |
42809427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 627
Target Start/End: Original strand, 18427336 - 18427373
Alignment:
| Q |
590 |
atttgcactcttgtagaaaaatattatcccatggattt |
627 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
18427336 |
atttgtactcttgttgaaaaatattatcccatggattt |
18427373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 461 - 744
Target Start/End: Original strand, 8363268 - 8363551
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||| |||| ||| || || ||||| || ||||||| |||||||||||| | | ||||||| |||| ||| |
|
|
| T |
8363268 |
ttttttactaccattgacaaacaattacaagagttgagtagtagatttagtgagcaagcaatggatttgttgactctaagttgtgctttgtctcctgagg |
8363367 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| || |||||||| ||||||||| ||| || |||||||| ||||||||||||||||||||||| | ||| | ||||| |||| || | |||||| |
|
|
| T |
8363368 |
atggatataaagcttttgacattgatactatatgtactcttgttgaaaaatattatcccatggattttagtgataaagagaaaattaatttgccatttca |
8363467 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttggc |
744 |
Q |
| |
|
|||| ||||||| || |||| ||||| ||| ||||||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
8363468 |
tcttcgacatttcctttttgaggctcgccaatcatcaactttgaaaaatttatcaactatccaagaattatgctcatgtttggc |
8363551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 461 - 743
Target Start/End: Original strand, 31421499 - 31421781
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| | ||||| ||||||||||| || ||||| || ||||||| ||||||||| || | | ||||||| ||| ||| |
|
|
| T |
31421499 |
ttttttactaccattgacaaacaattgcaagagttgaatagcagatttagtgagcaagcaatggatttgttgactttaagttgtgctttgtctccggagg |
31421598 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| || |||||||| ||||| | | ||| || |||||||| |||||||||||||||||| |||| | ||| ||||||||||||| || | |||||| |
|
|
| T |
31421599 |
atggatataaagcttttgacattaacactatatgtactcttgttgaaaaatattatcccatgaattttagtgatcaggagaagattaatttgccatttca |
31421698 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttgg |
743 |
Q |
| |
|
||||| |||||| || |||| |||||| || ||||||||||||| ||||||||||| |||||||| || ||||||||| |
|
|
| T |
31421699 |
tcttcaccatttcctttttgaggctcgtgaatcatcaactttgaaaaatttatcaactattcaagaattatgctcatgtttgg |
31421781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 459 - 646
Target Start/End: Original strand, 41596259 - 41596446
Alignment:
| Q |
459 |
tattttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaa |
558 |
Q |
| |
|
||||||||| ||||||||| || ||| |||||| |||||||| || || ||||| || ||||||| ||||| |||||| | | ||||||| |||||| |
|
|
| T |
41596259 |
tattttttactaccattgataaacaattacaagtgttgaatagtagatttagtgaggaggcaatggatttgttaactctaagttgtgctttgactcctaa |
41596358 |
T |
|
| Q |
559 |
ggatacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagatt |
646 |
Q |
| |
|
||||| || |||||||| | |||||| ||||||||||||||| || ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
41596359 |
ggatagatataaagcttttgatgttgatactatttgcactcttgttgataaatactatcccatggatttcaatgatcaagagaagatt |
41596446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 469 - 631
Target Start/End: Original strand, 33531682 - 33531843
Alignment:
| Q |
469 |
taccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaaggatacttac |
568 |
Q |
| |
|
||||||||| || ||| ||||||| |||||||| || || ||||| ||| ||||||| ||||| |||||| | | ||||||| ||||||||||| ||| |
|
|
| T |
33531682 |
taccattgataaacaattacaagagttgaatagtagatttagtgagcaggcaatggatttgttaactctaagttgtgctttgactcctaaggataattat |
33531781 |
T |
|
| Q |
569 |
caagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaat |
631 |
Q |
| |
|
|||||||| | |||| | ||||||||||||||| |||||||| ||| ||||| |||||||| |
|
|
| T |
33531782 |
aaagcttttgatgttgacactatttgcactcttgttgaaaaatactat-ccatgaatttcaat |
33531843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 461 - 744
Target Start/End: Original strand, 40925176 - 40925459
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| | ||||| |||||||||| || ||||| || ||||||| |||||||||||| | | ||||||| ||| ||| |
|
|
| T |
40925176 |
ttttttactaccattgacaaacaattgcaagagttgaatagcatatttagtgagcaagcaatggatttgttgactctaagttgtgctttgtctccagagg |
40925275 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| || |||||||| ||||| | | ||| || |||||||| ||||||||||||||||||||||| | ||| ||||||||||||| || | |||||| |
|
|
| T |
40925276 |
atggatataaagcttttgacattaacactatatgtactcttgttgaaaaatattatcccatggattttagtgaccaggagaagattaatttgccatttca |
40925375 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttggc |
744 |
Q |
| |
|
||| |||||||| || |||| |||||| || ||||||||||||| ||||||||||| |||||||| || |||||||||| |
|
|
| T |
40925376 |
tcttaaacatttcctttttgaggctcgtgaatcatcaactttgaaaaatttatcaactattcaagaattatgctcatgtttggc |
40925459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 462 - 744
Target Start/End: Original strand, 2736131 - 2736413
Alignment:
| Q |
462 |
tttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagga |
561 |
Q |
| |
|
|||||| |||||||||||| ||| | ||||| ||||||||||| || ||||| || ||||||| ||||||||| || | | ||||||| ||| |||| |
|
|
| T |
2736131 |
tttttactaccattgacaaacaattgcaagagttgaatagcagatttagtgagcaagcaatggatttgttgactttaagttgtgctttgtctccggagga |
2736230 |
T |
|
| Q |
562 |
tacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttcaa |
661 |
Q |
| |
|
| || |||||||| ||||| | | ||| || |||||||| ||||||||||||||||||||||| | ||| ||||||||||||| || | |||||| |
|
|
| T |
2736231 |
tggatataaagcttttgacattaacactatatgtactcttgttgaaaaatattatcccatggattttagtgaccaggagaagattaatttgccatttcat |
2736330 |
T |
|
| Q |
662 |
cttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttggc |
744 |
Q |
| |
|
||| |||||||| || |||| |||||| || ||||||||||||| ||||||||||| |||||||| || |||||||||| |
|
|
| T |
2736331 |
cttaaacatttcctttttgaggctcgtgaatcatcaactttgaaaaatttatcaactattcaagaattatgctcatgtttggc |
2736413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 461 - 744
Target Start/End: Complemental strand, 22127067 - 22126784
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||| ||||||||||| || ||| | || ||||| | |||||||||||| | | ||| ||| ||| || |
|
|
| T |
22127067 |
ttttttactaccattgacaaacaattacaagagttgaatagcagatttagtaagcaagcaatgaatttgttgactctaagttgtgcattgtctccggaga |
22126968 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| || |||||||| ||||| ||| ||| || |||||||| ||||||||||||||||||||||| | ||| ||||||||||||| || | |||||| |
|
|
| T |
22126967 |
atggatataaagcttttgacattaatactatatgtactcttgttgaaaaatattatcccatggattttagtgatcaggagaagattaatttgccatttca |
22126868 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttggc |
744 |
Q |
| |
|
|| |||||||| || |||| |||||| || ||||||||||||| ||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
22126867 |
tctaaaacatttcctttttgaggctcgtgaatcatcaactttgaaaaatttatcaactattcaagaattatgttcatgtttggc |
22126784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 646
Target Start/End: Complemental strand, 22510182 - 22509997
Alignment:
| Q |
459 |
tattttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaa |
558 |
Q |
| |
|
||||||||| ||||||||| || ||| ||||||| |||||||| || || ||||| || ||||||| ||||| |||||| | | ||||||| |||||| |
|
|
| T |
22510182 |
tattttttactaccattgataaacaattacaagagttgaatagtagatttagtgaggaggcaatggatttgttaactctaagttgtgctttgactcctaa |
22510083 |
T |
|
| Q |
559 |
ggatacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagatt |
646 |
Q |
| |
|
||||| ||| |||||||| | |||||| ||||||||||| || || ||||| ||||||| | |||||||||| || ||||||||| |
|
|
| T |
22510082 |
ggatagttataaagcttttgatgttgatactatttgcactc--gttgataaatactatcccacgaatttcaatgatcaagagaagatt |
22509997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 744
Target Start/End: Complemental strand, 8425863 - 8425580
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||| |||||||| || || ||||| | ||||||| |||||||||||| | | | ||||| ||| ||| |
|
|
| T |
8425863 |
ttttttactaccattgacaaacaattacaagagttgaatagtagatttagtgagcgagcaatggatttgttgactctaagttgttctttgtctcccgagg |
8425764 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| || |||||||| | |||| | ||| || | | |||| |||||||||||||||||||||| | ||| || | |||||||| | | |||| | |
|
|
| T |
8425763 |
atggatataaagcttttgatgttgacactatatgtaattttgttcaaaaatattatcccatggattttagtgatcatgcgaagattaaattgccatttga |
8425664 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttggc |
744 |
Q |
| |
|
|||| ||||||| || |||||| ||| ||| |||||||| || | ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
8425663 |
tcttcgacatttcctttttgatgttcgccaatcatcaactttcaagaatttatcaactattcaagaattgtgctcatgtttggc |
8425580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 461 - 729
Target Start/End: Complemental strand, 22270907 - 22270639
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| | ||||| ||||||||||| || ||||| || ||||||| ||||||||| || | | ||||||| ||| ||| |
|
|
| T |
22270907 |
ttttttactaccattgacaaacaattgcaagagttgaatagcagatttagtgagcaagcaatggatttgttgactttaagttgtgctttgtctccggagg |
22270808 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| || |||||||| ||||| | | ||| || |||||||| ||||||||||||||||||||||| | ||| ||||||||||||| || | |||||| |
|
|
| T |
22270807 |
atggatataaagcttttgacattaacactatatgtactcttgttgaaaaatattatcccatggattttagtgaccaggagaagattaatttgccatttca |
22270708 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaatt |
729 |
Q |
| |
|
||| |||||||| || |||| |||||| || ||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22270707 |
tcttaaacatttcctttttgaggctcgtgaatcatcaactttgaaaaatttatcaactattcaagaatt |
22270639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 459 - 646
Target Start/End: Original strand, 14009109 - 14009296
Alignment:
| Q |
459 |
tattttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaa |
558 |
Q |
| |
|
||||||||| ||||||||| || ||| ||||||| |||||||| || || ||||| || ||||||| ||||| |||||| | | ||||||| |||||| |
|
|
| T |
14009109 |
tattttttactaccattgataaacaattacaagagttgaatagtagatttagtgaggaggcaatggatttgttaactctaagttgtgctttgactcctaa |
14009208 |
T |
|
| Q |
559 |
ggatacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagatt |
646 |
Q |
| |
|
||||| ||| |||||||| | |||||| ||||||||||||||| || ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
14009209 |
ggatagttataaagcttttgatgttgatactatttgcactcttgttgataaatactatcccatggatttcaatgatcaagagaagatt |
14009296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 459 - 646
Target Start/End: Complemental strand, 23121581 - 23121394
Alignment:
| Q |
459 |
tattttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaa |
558 |
Q |
| |
|
||||||||| ||||||||| || ||| ||||||| |||||||| || || ||||| | ||||| | ||||| |||||| | | ||||||| |||||| |
|
|
| T |
23121581 |
tattttttactaccattgataaacaattacaagagttgaatagtagatttagtgaggatgcaatgaatttgttaactctaagttgtgctttgactcctaa |
23121482 |
T |
|
| Q |
559 |
ggatacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagatt |
646 |
Q |
| |
|
||||| ||| |||||||| | |||||| ||||||||||||||| || |||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
23121481 |
ggatagttataaagcttttgatgttgatactatttgcactcttgttgataaatattatcccatggatttcaatgatcaagggaagatt |
23121394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 459 - 646
Target Start/End: Original strand, 43524865 - 43525052
Alignment:
| Q |
459 |
tattttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaa |
558 |
Q |
| |
|
||||||||| ||||||||| || ||| ||||||| |||||||| || || ||||| || ||||||| ||||| |||||| | | ||||||| |||||| |
|
|
| T |
43524865 |
tattttttactaccattgataaacaattacaagagttgaatagtagatttagtgaggaggcaatggatttgttaactctaagttgtgctttgactcctaa |
43524964 |
T |
|
| Q |
559 |
ggatacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagatt |
646 |
Q |
| |
|
||||| ||| |||||||| | |||||| ||||||||||||||| || ||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
43524965 |
ggatagttataaagcttttgatgttgatactatttgcactcttgttgataaatactatcccatggatttcaatgatcaagagaagatt |
43525052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 647
Target Start/End: Original strand, 5088227 - 5088413
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||| |||||||| || || ||||| || ||||||| |||||||||||| | | | ||||| ||| ||| |
|
|
| T |
5088227 |
ttttttactaccattgactaacaattacaagagttgaatagtagatttagtgagcaagcaatggatttgttgactctaagttgttctttgtctcccgagg |
5088326 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagatta |
647 |
Q |
| |
|
|| || |||||||| | |||| | ||| || |||||||| |||||||||||||||||||||| | ||| || |||||||||| |
|
|
| T |
5088327 |
atggatataaagcttttgatgttgacactatatgtactcttgttcaaaaatattatcccatggattttagtgatcatgagaagatta |
5088413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 461 - 743
Target Start/End: Complemental strand, 14797901 - 14797619
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| | ||||| ||||||||||| || ||||| || |||||| ||||||| |||| | | ||||||| ||| ||| |
|
|
| T |
14797901 |
ttttttactaccattgacaaacaattgcaagagttgaatagcagatttagtgagcaagcaatggctttgttgagtctaagttgtgctttgtctccggagg |
14797802 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| || |||||||| ||||| | | ||| || |||||||| ||||||||||||||||||||||| | ||| ||||| || |||| || | |||||| |
|
|
| T |
14797801 |
atggatataaagcttttgacattaacactatatgtactcttgttgaaaaatattatcccatggattttagtgaccaggaaaacattaatttgccatttca |
14797702 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttgg |
743 |
Q |
| |
|
|||||||||||| || |||| |||||| || ||||||||||||| ||||||||||| |||||||| || ||||||||| |
|
|
| T |
14797701 |
tcttcaacatttcctttttgaggctcgtgaatcatcaactttgaaaaatttatcaactattcaagaattatgctcatgtttgg |
14797619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 461 - 633
Target Start/End: Original strand, 14461181 - 14461353
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| ||||||||| || ||| ||||||| |||||||| || || ||||| || ||||||| ||||| |||||| | | ||||||| ||||| ||| |
|
|
| T |
14461181 |
ttttttactaccattgataaacaattacaagagttgaatagtagatttagtgaggaggcaatggatttgttaactctaagttgtgctttgattcctgagg |
14461280 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatga |
633 |
Q |
| |
|
||| ||| |||||||| | |||||| ||||||||||||||| || ||||| ||| |||||||||||||||| |
|
|
| T |
14461281 |
atagttataaagcttttgatgttgatactatttgcactcttgttgataaatactattccatggatttcaatga |
14461353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 461 - 744
Target Start/End: Original strand, 55404574 - 55404857
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||| |||||||| || || ||| | || ||||||| |||||||||||| | | | ||||| ||| ||| |
|
|
| T |
55404574 |
ttttttactaccattgacaaacaattacaagagttgaatagtagatttagtaagcaagcaatggatttgttgactctaagttgttctttgtctcccgagg |
55404673 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
|| || |||||||| | |||| | ||| || |||||||| |||||||||||||||||||||| | ||| || |||||||||| | | |||| | |
|
|
| T |
55404674 |
atggatataaagcttttgatgttgacactatatgtactcttgttcaaaaatattatcccatggattttagtgatcatgagaagattaaattgccatttga |
55404773 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttggc |
744 |
Q |
| |
|
|||| | ||||| || |||||| ||| ||| |||||||| || | ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
55404774 |
tcttcgagatttcctttttgatgttcgccaatcatcaactttcaagaatttatcaactattcaagaattgtgctcatgtttggc |
55404857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 646
Target Start/End: Complemental strand, 2665214 - 2665150
Alignment:
| Q |
582 |
ttgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagatt |
646 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| | |||||||||||||||||| | ||||||||| |
|
|
| T |
2665214 |
ttgatactatttgcactcttgttgaaaaataatgtcccatggatttcaatgattaagagaagatt |
2665150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 462 - 743
Target Start/End: Original strand, 41831 - 42112
Alignment:
| Q |
462 |
tttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagga |
561 |
Q |
| |
|
|||||| |||||||||||| ||| | ||||| ||||||||||| || ||||| || |||||| ||||||| |||| | | ||||||| ||| |||| |
|
|
| T |
41831 |
tttttactaccattgacaaacaattgcaagagttgaatagcagatttagtgagcaagcaatggctttgttgagtctaagttgtgctttgtctccggagga |
41930 |
T |
|
| Q |
562 |
tacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttcaa |
661 |
Q |
| |
|
| || |||||||| ||||| | | ||| || |||||||| ||||||||||||||||||||||| | ||| ||||| || |||| || | |||||| |
|
|
| T |
41931 |
tggatataaagcttttgacattaacactatatgtactcttgttgaaaaatattatcccatggattttagtgaccaggataatattaatttgccatttcat |
42030 |
T |
|
| Q |
662 |
cttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttgg |
743 |
Q |
| |
|
|||||||||||| || |||| |||||| || ||||||||||||| ||||||||||| |||||||| || ||||||||| |
|
|
| T |
42031 |
cttcaacatttcctttttgaggctcgtgaatcatcaactttgaaaaatttatcaactattcaagaattatgctcatgtttgg |
42112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 459 - 646
Target Start/End: Complemental strand, 8135 - 7948
Alignment:
| Q |
459 |
tattttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaa |
558 |
Q |
| |
|
||||||||| |||||||| || ||| ||||||| |||||||| || || ||||| ||| ||||||| ||||| |||||| | | ||||||| |||||| |
|
|
| T |
8135 |
tattttttactaccattgttaaacaattacaagagttgaatagtagatttagtgagcagacaatggatttgttaactctaagttgtgctttgactcctaa |
8036 |
T |
|
| Q |
559 |
ggatacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagatt |
646 |
Q |
| |
|
||||| ||| |||||||| | |||| | ||||||||||||||| || ||||| | |||||||||||||||||| || ||||||||| |
|
|
| T |
8035 |
ggatagttataaagcttttgatgttgaaactatttgcactcttgttgagaaatactctcccatggatttcaatgaccaagagaagatt |
7948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 461 - 743
Target Start/End: Complemental strand, 11053070 - 11052789
Alignment:
| Q |
461 |
ttttttattaccattgacaagcaaatacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaagg |
560 |
Q |
| |
|
||||||| ||||||| |||| ||| ||||||| |||||||||| || ||||| || ||||| | |||||||||||| | | ||||| | ||||| ||| |
|
|
| T |
11053070 |
ttttttactaccattaacaaacaattacaagagttgaatagcatatttagtgagcaagcaatgaatttgttgactctaagttatgctt-gtttcctgagg |
11052972 |
T |
|
| Q |
561 |
atacttaccaagcttttaacattgataatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttca |
660 |
Q |
| |
|
||| | |||||||| ||||||| | | || |||||||| | ||||||||||||||||||||| | ||| || ||||||||||||| || |||||| |
|
|
| T |
11052971 |
atagagataaagcttttgacattgacacaacatgtactcttgttgcaaaatattatcccatggattttagtgatcaagagaagattactttaccatttca |
11052872 |
T |
|
| Q |
661 |
acttcaacatttcattattgatgctcgtcaagattcaactttgaaaagcttatcaactatccaagaattgtgtgcatgtttgg |
743 |
Q |
| |
|
|||| ||||| | || |||||||||| ||| ||||||||||| | ||||||||||| |||||||| || ||||||||| |
|
|
| T |
11052871 |
tcttcgacattccctttttgatgctcgccaatcatcaactttgaataatttatcaactattcaagaattatgctcatgtttgg |
11052789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 486 - 675
Target Start/End: Original strand, 27132606 - 27132795
Alignment:
| Q |
486 |
tacaagaattgaatagcaggttcagtgaccagtcaatggagttgttgactctaggctctgctttggttcctaaggatacttaccaagcttttaacattga |
585 |
Q |
| |
|
||||||| |||||||| || || ||||| | ||||||| |||||||||||| | | ||||||| |||| ||||| || |||||||| ||||||| |
|
|
| T |
27132606 |
tacaagagttgaatagtagatttagtgagcgagcaatggatttgttgactctaagttgtgctttgtctcctgaggatggatataaagcttttgacattga |
27132705 |
T |
|
| Q |
586 |
taatatttgcactcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttcaacttcaacatttcat |
675 |
Q |
| |
|
| ||| || |||||||| |||||||||| |||||||||||||| ||| || |||||||||| || | |||||| |||| ||||||||| |
|
|
| T |
27132706 |
cactatatgtactcttgttgaaaaatattttcccatggatttcagtgatcaagagaagattaatttgccatttcatcttctacatttcat |
27132795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 596 - 687
Target Start/End: Complemental strand, 51065450 - 51065359
Alignment:
| Q |
596 |
actcttgtagaaaaatattatcccatggatttcaatgagcaggagaagattacttcacgatttcaacttcaacatttcattattgatgctcg |
687 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||| | ||| || |||||||||| || || |||||| |||||| ||||| || |||||||||| |
|
|
| T |
51065450 |
actcttgttgaaaaatattattccatgaattttagtgatcaagagaagattaatttaccatttcatcttcaatatttcctttttgatgctcg |
51065359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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