View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18425_high_7 (Length: 456)

Name: NF18425_high_7
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18425_high_7
NF18425_high_7
[»] chr8 (5 HSPs)
chr8 (20-446)||(126406-126831)
chr8 (23-71)||(25192407-25192456)
chr8 (44-73)||(12124074-12124103)
chr8 (26-73)||(28642356-28642404)
chr8 (43-71)||(43737900-43737928)
[»] chr3 (5 HSPs)
chr3 (101-446)||(33058167-33058512)
chr3 (25-71)||(14216843-14216889)
chr3 (25-71)||(14222972-14223018)
chr3 (43-71)||(3164112-3164140)
chr3 (23-71)||(14223913-14223961)
[»] chr6 (5 HSPs)
chr6 (23-69)||(9658832-9658878)
chr6 (23-69)||(12696277-12696323)
chr6 (23-70)||(31959111-31959158)
chr6 (23-72)||(6389692-6389742)
chr6 (23-71)||(8365579-8365628)
[»] chr2 (5 HSPs)
chr2 (26-71)||(23717977-23718022)
chr2 (26-71)||(24105649-24105694)
chr2 (26-71)||(21091674-21091719)
chr2 (25-71)||(20539736-20539783)
chr2 (43-72)||(1886957-1886986)
[»] scaffold0171 (1 HSPs)
scaffold0171 (23-71)||(23371-23419)
[»] chr7 (4 HSPs)
chr7 (23-71)||(24105629-24105677)
chr7 (23-71)||(27944991-27945040)
chr7 (42-70)||(2334205-2334233)
chr7 (43-71)||(17851375-17851403)
[»] chr5 (5 HSPs)
chr5 (23-71)||(22013364-22013413)
chr5 (26-72)||(19820457-19820504)
chr5 (43-72)||(14674230-14674259)
chr5 (42-71)||(39205848-39205877)
chr5 (43-71)||(6401442-6401470)
[»] chr4 (3 HSPs)
chr4 (24-71)||(12165213-12165261)
chr4 (27-71)||(28720827-28720871)
chr4 (41-71)||(753012-753042)
[»] chr1 (5 HSPs)
chr1 (27-71)||(23439945-23439989)
chr1 (24-72)||(5927401-5927450)
chr1 (23-71)||(9630640-9630689)
chr1 (41-70)||(23653318-23653347)
chr1 (24-72)||(43112937-43112985)
[»] scaffold0018 (1 HSPs)
scaffold0018 (23-70)||(192309-192356)
[»] scaffold0793 (1 HSPs)
scaffold0793 (41-71)||(4962-4992)


Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Original strand, 126406 - 126831
Alignment:
Q  20 gttggcgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatagccggtggggtannnnnnnnnnnnnnnnnnctgctagcacttcattctt 119  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| ||||                  |||||||||||||||||||    
T  126406 gttggcgtgtcagtatccgtatcgtgtccgtgtgcgtatccgtgcttcatagccggtgcggtattttttgttcttttttt-ctgctagcacttcattctt 126504  T
Q  120 gacaaatcttagcaatgttttaactcactttgtttactatgttctgtttttcattccatgcagaatttaaccaagtatgaggatatatttcatgaggttc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  126505 gacaaatcttagcaatgttttaactcactttgtttactatgttctgtttttcattccatgcagaatttaaccaagtatgcggatatatttcatgaggttc 126604  T
Q  220 aaggtacgacttcatcttgaaactatccatttataaaatcaaaacctactataccaatttctgttgaaatttcctgctcacttcttttgtcattctctcc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  126605 aaggtacgacttcatcttgaaactatccatttataaaatcaaaagctactataccaatttctgttgaaatttcctgctcacttcttttgtcattctctcc 126704  T
Q  320 tttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttgattttgattttttaactgtaaacatatttcaattacttttatga 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  126705 tttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttgattttgattttttaactgcaaacatacttcaattacttttatga 126804  T
Q  420 gtatttatgacatcttttcttcctatg 446  Q
    |||||||||||||||||||||||||||    
T  126805 gtatttatgacatcttttcttcctatg 126831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 25192407 - 25192456
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccg-tgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  25192407 ggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 12124103 - 12124074
Alignment:
Q  44 tgtccgtgtctgtatccgtgcttcatagcc 73  Q
    ||||||||||||||||||||||||||||||    
T  12124103 tgtccgtgtctgtatccgtgcttcatagcc 12124074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 28642404 - 28642356
Alignment:
Q  26 gtgtcagtgtccgtatcgtgtccg-tgtctgtatccgtgcttcatagcc 73  Q
    |||||| ||||||| ||||||||| |||| |||||||||||||||||||    
T  28642404 gtgtcattgtccgtgtcgtgtccgatgtccgtatccgtgcttcatagcc 28642356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 43737900 - 43737928
Alignment:
Q  43 gtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||||||||||||||||||    
T  43737900 gtgtccgtgtctgtatccgtgcttcatag 43737928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 101 - 446
Target Start/End: Original strand, 33058167 - 33058512
Alignment:
Q  101 ctgctagcacttcattcttgacaaatcttagcaatgttttaactcactttgtttactatgttctgtttttcattccatgcagaatttaaccaagtatgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33058167 ctgctagcacttcattcttgacaaatcttagcaatgttttaactcactttgtttactatgttctgtttttcattccatgcagaatttaaccaagtctgag 33058266  T
Q  201 gatatatttcatgaggttcaaggtacgacttcatcttgaaactatccatttataaaatcaaaacctactataccaatttctgttgaaatttcctgctcac 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||  ||||||||||||||||||||||  |    
T  33058267 gatatatttcatgaggttcaaggtacggcttcatcttgaaactatccatttataatatcagaagctactatacttatttctgttgaaatttcctgctatc 33058366  T
Q  301 ttcttttgtcattctctcctttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttgattttgattttttaactgtaaacat 400  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33058367 ttcttttgtcattccctactttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttgattttgattttttaactgcaaacat 33058466  T
Q  401 atttcaattacttttatgagtatttatgacatcttttcttcctatg 446  Q
      |||| |||||||||||||||||||||||||||||||||||||||    
T  33058467 gcttcagttacttttatgagtatttatgacatcttttcttcctatg 33058512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 14216889 - 14216843
Alignment:
Q  25 cgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  14216889 cgtgtcagtgtccgtgtcgtgtctgtgtccgcatccgtgcttcatag 14216843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 14223018 - 14222972
Alignment:
Q  25 cgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  14223018 cgtgtcagtgtccgtgtcgtgtctgtgtccgcatccgtgcttcatag 14222972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 3164112 - 3164140
Alignment:
Q  43 gtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||||||||||||||||||    
T  3164112 gtgtccgtgtctgtatccgtgcttcatag 3164140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 14223913 - 14223961
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||| ||||| || |||||||||||||||| | ||||||||||||    
T  14223913 ggcgtgtcggtgtctgtgtcgtgtccgtgtctgtgttcgtgcttcatag 14223961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 9658878 - 9658832
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcat 69  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  9658878 ggcgtgtcagtgtccgtgtcgtgtctgtgtctgtatccgtgcttcat 9658832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 12696323 - 12696277
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcat 69  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  12696323 ggcgtgtcagtgtccgtgtcgtgtccgtgtccgtatccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 31959158 - 31959111
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcata 70  Q
    ||||||||||||| ||| || |||||||||| ||||||||||||||||    
T  31959158 ggcgtgtcagtgttcgtgtcatgtccgtgtccgtatccgtgcttcata 31959111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 6389742 - 6389692
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccg-tgtctgtatccgtgcttcatagc 72  Q
    ||||||| ||||||||| ||||||||| ||||||| |||||||||||||||    
T  6389742 ggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtccgtgcttcatagc 6389692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 8365579 - 8365628
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtc-cgtgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||||| |||||||  ||||| |||||||||||||||||    
T  8365579 ggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag 8365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 23718022 - 23717977
Alignment:
Q  26 gtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  23718022 gtgtcagtgtccgtgtcatgtccgtgtctgtatccgtgcttcatag 23717977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 24105694 - 24105649
Alignment:
Q  26 gtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  24105694 gtgtcagtgtccgtgtcatgtccgtgtctgtatccgtgcttcatag 24105649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 21091719 - 21091674
Alignment:
Q  26 gtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||| | |||||||||| ||||||||||||||||||    
T  21091719 gtgtcagtgtccgtcttgtgtccgtgtttgtatccgtgcttcatag 21091674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 20539736 - 20539783
Alignment:
Q  25 cgtgtcagtgtccgtatcgtgtcc-gtgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  20539736 cgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 1886957 - 1886986
Alignment:
Q  43 gtgtccgtgtctgtatccgtgcttcatagc 72  Q
    ||||||||||||||||||||||||||||||    
T  1886957 gtgtccgtgtctgtatccgtgcttcatagc 1886986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 23419 - 23371
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||| || ||||||||||||| |||||||||||||||||    
T  23419 ggcgtgtcagtgtctgtgtcgtgtccgtgtccgtatccgtgcttcatag 23371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 24105677 - 24105629
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||||| |||||||||| || |||||||||||||||||    
T  24105677 ggcgtgtcagtgtccgtgtcgtgtccgtatccgtatccgtgcttcatag 24105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 27945040 - 27944991
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtcc-gtgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  27945040 ggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 2334233 - 2334205
Alignment:
Q  42 cgtgtccgtgtctgtatccgtgcttcata 70  Q
    |||||||||||||||||||||||||||||    
T  2334233 cgtgtccgtgtctgtatccgtgcttcata 2334205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 17851403 - 17851375
Alignment:
Q  43 gtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||||||||||||||||||    
T  17851403 gtgtccgtgtctgtatccgtgcttcatag 17851375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 22013413 - 22013364
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtcc-gtgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  22013413 ggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 19820457 - 19820504
Alignment:
Q  26 gtgtcagtgtccgtatcgtgtcc-gtgtctgtatccgtgcttcatagc 72  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  19820457 gtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatagc 19820504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 14674259 - 14674230
Alignment:
Q  43 gtgtccgtgtctgtatccgtgcttcatagc 72  Q
    ||||||||||||||||||||||||||||||    
T  14674259 gtgtccgtgtctgtatccgtgcttcatagc 14674230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 39205877 - 39205848
Alignment:
Q  42 cgtgtccgtgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||||||||||||||||||    
T  39205877 cgtgtccgtgtctgtatccgtgcttcatag 39205848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 6401470 - 6401442
Alignment:
Q  43 gtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||||||||||||||||||    
T  6401470 gtgtccgtgtctgtatccgtgcttcatag 6401442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 12165261 - 12165213
Alignment:
Q  24 gcgtgtcagtgtccgtatcgtgtc-cgtgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  12165261 gcgtgtcagtgtccgtatcgtgtcaggtgtctgcatccgtgcttcatag 12165213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 28720871 - 28720827
Alignment:
Q  27 tgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||    
T  28720871 tgtcagtgttcgtgtcgtgtccgtgtctgtatacgtgcttcatag 28720827  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 753012 - 753042
Alignment:
Q  41 tcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||||||||||||||||||||    
T  753012 tcgtgtccgtgtctgtatccgtgcttcatag 753042  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 23439989 - 23439945
Alignment:
Q  27 tgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||    
T  23439989 tgtcggtgtccgtgtcgtgtccgtgtctgtgtccgtgcttcatag 23439945  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 5927401 - 5927450
Alignment:
Q  24 gcgtgtcagtgtccgtatcgtgtcc-gtgtctgtatccgtgcttcatagc 72  Q
    |||||||||||||||| |||||||| ||||| |||||||||||| |||||    
T  5927401 gcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttaatagc 5927450  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 9630640 - 9630689
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccg-tgtctgtatccgtgcttcatag 71  Q
    ||||||||||||||||| | ||||| | ||||||||||||||||||||||    
T  9630640 ggcgtgtcagtgtccgtgttgtgtctggtgtctgtatccgtgcttcatag 9630689  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 23653347 - 23653318
Alignment:
Q  41 tcgtgtccgtgtctgtatccgtgcttcata 70  Q
    ||||||||||||||||||||||||||||||    
T  23653347 tcgtgtccgtgtctgtatccgtgcttcata 23653318  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 43112985 - 43112937
Alignment:
Q  24 gcgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcatagc 72  Q
    |||||||  |||| || ||||||||||||||||| ||||||||||||||    
T  43112985 gcgtgtccatgtctgtgtcgtgtccgtgtctgtacccgtgcttcatagc 43112937  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 192309 - 192356
Alignment:
Q  23 ggcgtgtcagtgtccgtatcgtgtccgtgtctgtatccgtgcttcata 70  Q
    ||||||||||||||||||||||||| ||||| |||||| || ||||||    
T  192309 ggcgtgtcagtgtccgtatcgtgtctgtgtccgtatccatgtttcata 192356  T

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Target: scaffold0793 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 4962 - 4992
Alignment:
Q  41 tcgtgtccgtgtctgtatccgtgcttcatag 71  Q
    |||||||||||||||||||||||||||||||    
T  4962 tcgtgtccgtgtctgtatccgtgcttcatag 4992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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