View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18425_low_11 (Length: 455)
Name: NF18425_low_11
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 8097929 - 8097779
Alignment:
| Q |
58 |
ataatttattttgatcctattaaccaacaatatttgatcataatatatacaattaaacacaatagaaaagcatacagatagacgacaccttaagcactaa |
157 |
Q |
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| T |
8097929 |
ataatttattttgatcctattaaccaacaatatttgatcataatatatacaattaaacacagtagaaaagcatacagatagacgacaccttaagcactaa |
8097830 |
T |
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| Q |
158 |
catttttaaatagtaattattaatacaattaatttaattgaaggcttaatt |
208 |
Q |
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| T |
8097829 |
catttttaaaaagtaaatattaatacaattaatttaattgaaggcttaatt |
8097779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 8097706 - 8097635
Alignment:
| Q |
299 |
gctccttagtgacctgtt-ctcacccgttgttttctcacactaactc-aaagacaaaagagaaaaagacaac |
368 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8097706 |
gctccttagtgacctgtttctcacctgttgttttctcacactaactcaaaagacaaaagagaaaaagacaac |
8097635 |
T |
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