View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18425_low_13 (Length: 433)
Name: NF18425_low_13
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 9166212 - 9166646
Alignment:
| Q |
10 |
catcatcatcatcaaggtcccctccccttggaccttcatcgtcatcatagccacnnnnnnnattcagtccatgtctgttcttcttatctacttcctcatc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
9166212 |
catcatcatcatcaaggtcccctccccttggaccttcatcgtcatcatagccactttttttattcagtccatgtctattcttcttatctacttcctcatc |
9166311 |
T |
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| Q |
110 |
ttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctcccaccacctgcgttgctttctttgtcatct |
197 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9166312 |
ttcatcttcctctcctttatcagaggaaggaccttcatcatcatcatcaccagtttttttacggcttctcccaccacctgcgttgctttctttgtcatct |
9166411 |
T |
|
| Q |
198 |
aacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttct |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166412 |
aacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttct |
9166511 |
T |
|
| Q |
298 |
cttctgcttcctccaaagttaactgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattg |
397 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166512 |
cttctgcttcctccaaagttaattgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgcggaactttgtatcatcctactgtcattg |
9166611 |
T |
|
| Q |
398 |
agcagtaataaacacagataagaaaataaagagca |
432 |
Q |
| |
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| T |
9166612 |
aacagtaataaacacagataagaaaataaagagca |
9166646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 82 - 423
Target Start/End: Original strand, 9154867 - 9155220
Alignment:
| Q |
82 |
gtctgttcttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctccc |
169 |
Q |
| |
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|||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
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| T |
9154867 |
gtcttttcttcctatctacttcctcgtcttcatcttcctctcctttatcagaggaaggaccttcatcttcatcatcaccagtctttttacggcctctccc |
9154966 |
T |
|
| Q |
170 |
accacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatca |
269 |
Q |
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||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9154967 |
accccctgcgttgctctccttgtcatctaacttcccatgttcaccaaatgcagcaggcccattgtttgctgctttcatcatccatctttgatatccatca |
9155066 |
T |
|
| Q |
270 |
gcagtctttttcctattattcatcttctcttctgcttcctccaaagttaactgcttatactgcgcaactttgttaaagttgtacctaaataacagcatgc |
369 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||||| || ||||| |||||||||||||||||| | || ||||||| |
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| T |
9155067 |
gcagtttttttcctatttttcatcttctcttctgcttcctctaaagtcaattgcttatattgtgcaaccttgttaaagttgtacctacaaaaaagcatgc |
9155166 |
T |
|
| Q |
370 |
ggaactttgtatcatcctactgtcattgagcagtaataaacacagataagaaaa |
423 |
Q |
| |
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||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
9155167 |
caaactttgcatcatcctactgtctttgagcagtaacaaacacagataagaaaa |
9155220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 9154799 - 9154845
Alignment:
| Q |
11 |
atcatcatcatcaaggtcccctccccttggaccttcatcgtcatcat |
57 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||| || ||||||| |
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|
| T |
9154799 |
atcatcctcatcatggtcccctccccttggaccttcttcatcatcat |
9154845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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