View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18425_low_14 (Length: 399)
Name: NF18425_low_14
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 41153743 - 41153359
Alignment:
| Q |
1 |
ttttttaaaggaaagactaaataatagccttactctccttcnnnnnnnnnnnnn-ctaattagccttactcttgcaccaactctaaatttatatcgtaaa |
99 |
Q |
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| T |
41153743 |
ttttttaaaggaaagactaaataatagccttactctccttcaaaaaaaaagaaaactaattagccttactcttgcaccaactctaattttatatcgtaaa |
41153644 |
T |
|
| Q |
100 |
caatgtttaatacaaaattttactatggtttttgtcttaatcatttttatccaactacaacgttaacattcattggtggtaatcatatttgaagcacggt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41153643 |
caatgtttaatacaaaattttactatggtttttgtcttaatcatttttatccaactacaacgttaacattcattggtggtaatcatatttgaagcacggt |
41153544 |
T |
|
| Q |
200 |
taaatattgaatataaatctctnnnnnnntaaaatataaacatcttcnnnnnnngttacaaaaatataaacatcttttaatcgaaattcaaattttaatt |
299 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41153543 |
taaatattgaatataaatctctaaaaaattaaaatataaacatcttctttttttgttacaaaaatataaacatcttttaatcgaaattcaaattttgatt |
41153444 |
T |
|
| Q |
300 |
caccacatcgtaaaatgctagtcccttattagactcgatcaacgttggttttgttcgaagaagctcaacattcattggttatttg |
384 |
Q |
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|||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41153443 |
caccacattataaaatgttagtccctttttagactcaatcaacgttggttttgttcgaagaagctcaacattcattggttatttg |
41153359 |
T |
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