View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18425_low_18 (Length: 361)
Name: NF18425_low_18
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 49301668 - 49302005
Alignment:
| Q |
14 |
caatatggctatgctccattgcaagcataagtacgtgatcatcaattcatgcacgttaagtacagttacgttagccaagaagtggtggcccttggcttct |
113 |
Q |
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| T |
49301668 |
caatatggctatgctccattgcaagcataagtacgtgatcatca-----tgcacgttaagtacagttacgttagccaagaagtggtggcccttggcttct |
49301762 |
T |
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| Q |
114 |
atgtagagccaattaccaaattaagtatcaaatcattggtcgatatgtggggaaggaacatctacataagtctgcttttggcagcctttttattaaagaa |
213 |
Q |
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| T |
49301763 |
atgtagagccaattaccaaattaagtatcaaatcattggtcgatatgtggggaaggaacatctacataagtgtgcttttg-cagcctttttattaaagaa |
49301861 |
T |
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| Q |
214 |
taaagaaagtagttatatatagcaacaaaacgtggcgcctcgagagacttgacatagtttatagtttttgacatgaacattactcgtaccaccgatattc |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49301862 |
taaagaaagtagttatatataacaacaaaacgtggcgcctcgagagacttgacatagtttatagtttttgacatgaacattactcgtaccaccgatattc |
49301961 |
T |
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| Q |
314 |
tccaagctagtggtaaccatatgccacgataaataaagttagaa |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49301962 |
tccaagctagtggtaaccatatgccacgataaataaagtgagaa |
49302005 |
T |
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