View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18425_low_2 (Length: 846)

Name: NF18425_low_2
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18425_low_2
NF18425_low_2
[»] chr7 (25 HSPs)
chr7 (458-831)||(34875461-34875834)
chr7 (19-368)||(34875043-34875386)
chr7 (493-671)||(39007530-39007708)
chr7 (490-549)||(46346719-46346778)
chr7 (490-543)||(6797394-6797447)
chr7 (490-554)||(44141249-44141313)
chr7 (490-552)||(5757390-5757452)
chr7 (490-552)||(27335629-27335690)
chr7 (490-554)||(16933242-16933306)
chr7 (490-554)||(16938625-16938689)
chr7 (490-554)||(20000672-20000736)
chr7 (490-554)||(763701-763765)
chr7 (490-554)||(11732645-11732709)
chr7 (490-554)||(30884220-30884284)
chr7 (490-554)||(31660073-31660137)
chr7 (490-554)||(41911107-41911171)
chr7 (490-554)||(46358524-46358588)
chr7 (490-547)||(24359875-24359932)
chr7 (490-543)||(45402879-45402932)
chr7 (490-554)||(47340150-47340215)
chr7 (327-364)||(23709315-23709352)
chr7 (513-558)||(25778863-25778908)
chr7 (526-555)||(32090584-32090613)
chr7 (501-554)||(35736963-35737016)
chr7 (515-552)||(46024055-46024092)
[»] chr1 (33 HSPs)
chr1 (489-828)||(31529389-31529728)
chr1 (485-828)||(51801457-51801800)
chr1 (490-668)||(2741040-2741215)
chr1 (486-556)||(33097405-33097475)
chr1 (488-561)||(44688601-44688674)
chr1 (557-668)||(28323177-28323288)
chr1 (488-554)||(44260520-44260586)
chr1 (490-552)||(37639345-37639407)
chr1 (490-555)||(28323329-28323394)
chr1 (490-552)||(35198181-35198243)
chr1 (494-543)||(20372213-20372262)
chr1 (490-554)||(51420349-51420412)
chr1 (500-554)||(34369674-34369728)
chr1 (490-543)||(13590471-13590524)
chr1 (490-554)||(11421598-11421662)
chr1 (490-554)||(49936935-49936999)
chr1 (490-554)||(50351807-50351871)
chr1 (490-543)||(5077457-5077510)
chr1 (494-543)||(13673899-13673948)
chr1 (490-547)||(21256777-21256834)
chr1 (515-579)||(23921871-23921935)
chr1 (490-554)||(24635930-24635994)
chr1 (490-554)||(30788352-30788414)
chr1 (490-554)||(4097906-4097970)
chr1 (490-554)||(18618839-18618903)
chr1 (490-554)||(19897758-19897822)
chr1 (490-554)||(20434720-20434784)
chr1 (490-554)||(23175520-23175584)
chr1 (490-554)||(25889026-25889090)
chr1 (490-554)||(28375468-28375532)
chr1 (490-554)||(43452546-43452610)
chr1 (490-554)||(48762329-48762393)
chr1 (515-552)||(18056812-18056849)
[»] chr3 (31 HSPs)
chr3 (488-671)||(53594970-53595153)
chr3 (490-554)||(47728392-47728456)
chr3 (489-554)||(37319458-37319523)
chr3 (490-554)||(51682000-51682064)
chr3 (490-549)||(23699331-23699390)
chr3 (490-549)||(23717786-23717845)
chr3 (490-549)||(23736242-23736301)
chr3 (490-543)||(32232995-32233048)
chr3 (490-545)||(23755289-23755344)
chr3 (490-554)||(26662536-26662600)
chr3 (490-554)||(33414011-33414075)
chr3 (488-555)||(39195105-39195172)
chr3 (494-552)||(28299952-28300010)
chr3 (490-554)||(3475405-3475469)
chr3 (490-554)||(9106271-9106335)
chr3 (490-554)||(19284675-19284739)
chr3 (490-554)||(46237756-46237820)
chr3 (490-554)||(47335036-47335100)
chr3 (490-547)||(34563352-34563409)
chr3 (490-547)||(41192355-41192412)
chr3 (490-547)||(51846785-51846842)
chr3 (490-554)||(2941924-2941988)
chr3 (490-554)||(9595978-9596042)
chr3 (490-554)||(10986356-10986420)
chr3 (490-554)||(30947909-30947973)
chr3 (491-543)||(41568836-41568888)
chr3 (490-554)||(54379167-54379231)
chr3 (515-554)||(19385313-19385352)
chr3 (515-554)||(51362436-51362475)
chr3 (515-552)||(50754034-50754071)
chr3 (515-552)||(52987650-52987687)
[»] chr8 (32 HSPs)
chr8 (490-671)||(12355426-12355607)
chr8 (687-828)||(38121861-38122002)
chr8 (490-669)||(2522871-2523050)
chr8 (488-669)||(28698463-28698645)
chr8 (687-828)||(38608121-38608262)
chr8 (687-828)||(38792904-38793045)
chr8 (488-562)||(13526661-13526735)
chr8 (488-562)||(13616196-13616270)
chr8 (488-549)||(40247288-40247349)
chr8 (490-554)||(30413918-30413982)
chr8 (489-540)||(10443582-10443633)
chr8 (495-562)||(30651958-30652025)
chr8 (490-547)||(9852274-9852331)
chr8 (490-547)||(34648133-34648190)
chr8 (490-554)||(10237358-10237422)
chr8 (490-554)||(19784275-19784339)
chr8 (490-554)||(41099186-41099250)
chr8 (490-554)||(43690644-43690708)
chr8 (490-552)||(15181794-15181856)
chr8 (327-368)||(10650574-10650615)
chr8 (490-547)||(35302591-35302648)
chr8 (490-554)||(7857684-7857748)
chr8 (490-554)||(15227034-15227098)
chr8 (502-554)||(34633319-34633371)
chr8 (490-554)||(41451109-41451173)
chr8 (515-558)||(42433729-42433772)
chr8 (490-554)||(1671803-1671870)
chr8 (515-552)||(4836701-4836738)
chr8 (515-552)||(4842146-4842183)
chr8 (515-552)||(7614096-7614133)
chr8 (515-552)||(8550532-8550569)
chr8 (515-552)||(32987445-32987482)
[»] chr4 (35 HSPs)
chr4 (488-667)||(43852506-43852684)
chr4 (687-828)||(28731435-28731576)
chr4 (489-562)||(16298924-16298997)
chr4 (490-555)||(25574125-25574190)
chr4 (490-548)||(24686576-24686634)
chr4 (490-554)||(10472501-10472565)
chr4 (490-554)||(13635723-13635787)
chr4 (490-554)||(49492510-49492574)
chr4 (500-554)||(26578187-26578241)
chr4 (490-587)||(38010145-38010243)
chr4 (490-552)||(50563729-50563790)
chr4 (490-554)||(1621879-1621943)
chr4 (505-554)||(6386539-6386590)
chr4 (490-554)||(15051134-15051198)
chr4 (490-554)||(30597703-30597767)
chr4 (490-554)||(36011847-36011911)
chr4 (490-554)||(46672443-46672507)
chr4 (490-554)||(51921263-51921327)
chr4 (490-554)||(53441324-53441388)
chr4 (490-554)||(55765485-55765549)
chr4 (490-552)||(1729615-1729677)
chr4 (502-547)||(30357823-30357868)
chr4 (491-543)||(2848118-2848170)
chr4 (490-554)||(11785978-11786042)
chr4 (490-554)||(11798145-11798209)
chr4 (490-554)||(27865735-27865799)
chr4 (490-554)||(35291546-35291610)
chr4 (490-554)||(49426055-49426119)
chr4 (515-558)||(29826600-29826643)
chr4 (515-558)||(50643771-50643814)
chr4 (489-519)||(48740608-48740638)
chr4 (515-552)||(4168386-4168423)
chr4 (515-552)||(26447412-26447449)
chr4 (515-552)||(36621701-36621738)
chr4 (755-784)||(50643827-50643856)
[»] chr2 (22 HSPs)
chr2 (488-654)||(16141973-16142139)
chr2 (573-667)||(40853586-40853680)
chr2 (488-562)||(39548044-39548118)
chr2 (490-555)||(36636934-36636999)
chr2 (490-554)||(5098720-5098784)
chr2 (488-555)||(13081857-13081924)
chr2 (491-546)||(40853685-40853740)
chr2 (490-554)||(25995290-25995354)
chr2 (490-554)||(8149835-8149899)
chr2 (490-554)||(8154459-8154523)
chr2 (490-552)||(4281788-4281850)
chr2 (490-554)||(1292177-1292241)
chr2 (490-554)||(15016564-15016628)
chr2 (491-543)||(24024633-24024685)
chr2 (490-554)||(39355039-39355103)
chr2 (490-554)||(7487252-7487316)
chr2 (490-554)||(9143589-9143653)
chr2 (490-554)||(34464715-34464779)
chr2 (490-548)||(2263577-2263635)
chr2 (515-552)||(18298111-18298148)
chr2 (490-547)||(18762871-18762928)
chr2 (490-547)||(41346045-41346102)
[»] chr6 (13 HSPs)
chr6 (488-562)||(16968013-16968087)
chr6 (489-562)||(4338610-4338683)
chr6 (491-543)||(27079939-27079991)
chr6 (490-552)||(18611192-18611254)
chr6 (490-540)||(32556348-32556398)
chr6 (490-554)||(31216666-31216730)
chr6 (488-554)||(6900805-6900871)
chr6 (490-547)||(30908656-30908713)
chr6 (490-554)||(1449546-1449610)
chr6 (490-554)||(1536894-1536958)
chr6 (490-554)||(7089086-7089150)
chr6 (490-554)||(34870084-34870148)
chr6 (515-552)||(35119263-35119300)
[»] chr5 (19 HSPs)
chr5 (490-554)||(33868159-33868223)
chr5 (490-552)||(16668794-16668856)
chr5 (490-552)||(18465556-18465618)
chr5 (491-551)||(4674965-4675025)
chr5 (490-554)||(16552637-16552701)
chr5 (490-543)||(39056461-39056514)
chr5 (491-543)||(15913140-15913192)
chr5 (490-554)||(26637835-26637899)
chr5 (327-368)||(15024333-15024374)
chr5 (491-543)||(7183142-7183194)
chr5 (490-554)||(13552987-13553051)
chr5 (490-554)||(14940354-14940418)
chr5 (490-554)||(15416668-15416732)
chr5 (490-554)||(30783439-30783503)
chr5 (490-554)||(3884033-3884097)
chr5 (490-554)||(14394472-14394536)
chr5 (488-543)||(6054367-6054422)
chr5 (515-552)||(13362798-13362835)
chr5 (515-552)||(25017217-25017254)
[»] scaffold0006 (2 HSPs)
scaffold0006 (490-543)||(209330-209383)
scaffold0006 (494-543)||(171513-171562)
[»] scaffold0069 (1 HSPs)
scaffold0069 (494-543)||(51367-51416)
[»] scaffold0460 (1 HSPs)
scaffold0460 (494-543)||(1612-1661)
[»] scaffold0571 (1 HSPs)
scaffold0571 (490-554)||(674-738)
[»] scaffold0045 (1 HSPs)
scaffold0045 (490-554)||(33688-33752)
[»] scaffold0002 (1 HSPs)
scaffold0002 (490-540)||(450206-450256)
[»] scaffold0012 (1 HSPs)
scaffold0012 (490-543)||(119206-119259)
[»] scaffold0717 (1 HSPs)
scaffold0717 (491-543)||(7351-7403)
[»] scaffold0581 (1 HSPs)
scaffold0581 (490-554)||(8419-8483)
[»] scaffold0238 (1 HSPs)
scaffold0238 (515-554)||(25230-25269)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 458 - 831
Target Start/End: Original strand, 34875461 - 34875834
Alignment:
Q  458 gtgcttttgtgtgtgggtgtctaaatgagagcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgat 557  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  34875461 gtgcttttgtgtgtgggtgtctaaatgagggcaaagttattatgcataagccatttccttatgcaccctgcataaacacttcacaaccatcagatttgat 34875560  T
Q  558 cgcactctcaatatctgatcgcacacacgcagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacg 657  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||    
T  34875561 cgcactctcaatatctgattgcacacacgcagaagctcatcgtagctccgacgccgacgtgattctcacccttgctcgccgctccgacgtgatttatccg 34875660  T
Q  658 gacatgttcacgacattacttctttgtcattcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgc 757  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  34875661 gacaggttcacgacattacttctttgtcgttcttctctcacactgcattacatccaccgattttgtctcatctcggttttcacgagcttgcaaccgccgc 34875760  T
Q  758 tccgtcgctctccgacgctgcaaccaccacttcccctgcttggactggtcctttcactatttttgctccctttg 831  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34875761 tccgtcactctccgacgctgcaaccaccacttcccctgcttggaccggtcctttcactatttttgctccctttg 34875834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 34875043 - 34875386
Alignment:
Q  19 attgatcatatgcatgtgtttaccgtgagaacgtataggacaaaacggactagacttagtaaaagatttgaataatggataatcactcacccagacatat 118  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34875043 attgatcatatgcatgtgtttaccgtgtgaacgtgtaggacaaaacggactagacttagtaaaaaatttgaataatggataatcactcacccagacatat 34875142  T
Q  119 taattataatatcaatagttatagtattgaagatttcaacatgcaattatattaaagtctccgttttactattaatttaggtgcatggtaggttggttac 218  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34875143 taattataacatcaatagttatagtattgaagatttcaacatgcaattatattaaagtctccgttttactattaatttaggtgcatggtaggttggttgc 34875242  T
Q  219 atattagtagatcattcacgtctaattaatgagacatgatcgtaatgatatttatatatgcagccccttcccctacgtacggaaagaagaaaacatgatg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||    
T  34875243 atattagtagatcattcacgtctaattaatgagacatgatcgtaatgatatttatatatgcag------cccctacgtacggaaagaagaaaacatgatg 34875336  T
Q  319 ttcatctcggaaaatacttaattgggtacaagggtttgagcacttggttt 368  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  34875337 ttcatcccggaaaatacttaattgggtagaagggtttgagcacttggttt 34875386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 493 - 671
Target Start/End: Complemental strand, 39007708 - 39007530
Alignment:
Q  493 gttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgcagaag 592  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||||| |||  |||||||||||||||||||||||    
T  39007708 gttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcatatttgattgcactttcacaatctgatcgcacacacgcagaag 39007609  T
Q  593 ctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgac 671  Q
    ||||| ||||||||||  ||||| |||||||||||||||||||||||||  ||||||||||| ||| || |||||||||    
T  39007608 ctcatcgtagctccgacaccgacgtgattctcacccttgctcgccgctctgacgtgatttatccggccaggttcacgac 39007530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 490 - 549
Target Start/End: Complemental strand, 46346778 - 46346719
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 549  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46346778 aaagttattatgcataagtcattttcttatgcatcctgtataaacacttcacaaccatca 46346719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 6797447 - 6797394
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6797447 aaagttattatgcataagtcatttccttatgcatcctgcataaacacttcacaa 6797394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 44141313 - 44141249
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  44141313 aaagttatcatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgattt 44141249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 5757390 - 5757452
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||    
T  5757390 aaagttattatgcataagacatttccttatgcaccgtgcataaacacttcacaaccatcagat 5757452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 27335690 - 27335629
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27335690 aaagttattataaataagtcattttcttatgca-cctgcataaacacttcacaaccatcagat 27335629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 16933306 - 16933242
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  16933306 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 16933242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 16938689 - 16938625
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  16938689 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 16938625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 20000736 - 20000672
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  20000736 aaagttatggtgcataagtcatttacttatgcaccgtgcataaacacatcacaaccatcagattt 20000672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 763701 - 763765
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  763701 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacgtcacaaccatcagattt 763765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 11732709 - 11732645
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||||||||||||   |||||||||||||||||||||| ||||||    
T  11732709 aaagttatggtgcataagccattttcttatgcactgtgcataaacacttcacaaccattagattt 11732645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 30884284 - 30884220
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  30884284 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 30884220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 31660073 - 31660137
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  31660073 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 31660137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 41911171 - 41911107
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  41911171 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 41911107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 46358524 - 46358588
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  46358524 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 46358588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 24359875 - 24359932
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||||||||||| |||||||| | ||||| ||||||||||||||||    
T  24359875 aaagttatggtgcataagtcatttccttatgcaccgtgcatcaacacttcacaaccat 24359932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 45402932 - 45402879
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    ||||||||||||||||||| |||| |||||||| || |||||||||||| ||||    
T  45402932 aaagttattatgcataagttatttccttatgcacccagcataaacactttacaa 45402879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 47340150 - 47340215
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcat-aaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| ||||||||||||| | ||||| |||||| |||||||||||||||||    
T  47340150 aaagttatggtgcataagttattttcttatgcaccgtgcataaaacacatcacaaccatcagattt 47340215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 23709315 - 23709352
Alignment:
Q  327 ggaaaatacttaattgggtacaagggtttgagcacttg 364  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  23709315 ggaaaatatttaattgggcacaagggtttgagcacttg 23709352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 558
Target Start/End: Original strand, 25778863 - 25778908
Alignment:
Q  513 ttcttatgcatcctgcataaacacttcacaaccatcagatttgatc 558  Q
    ||||||||||   ||||||| |||||||||||||||||||||||||    
T  25778863 ttcttatgcactgtgcataagcacttcacaaccatcagatttgatc 25778908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 555
Target Start/End: Complemental strand, 32090613 - 32090584
Alignment:
Q  526 tgcataaacacttcacaaccatcagatttg 555  Q
    ||||||||||||||||||||||||||||||    
T  32090613 tgcataaacacttcacaaccatcagatttg 32090584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 501 - 554
Target Start/End: Original strand, 35736963 - 35737016
Alignment:
Q  501 gcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||| |||| |||||||| | ||||||||||| |||||||||||| ||||    
T  35736963 gcataagttatttccttatgcaccgtgcataaacacatcacaaccatcatattt 35737016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Original strand, 46024055 - 46024092
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  46024055 cttatgcaccgtgcataaacacttcacaaccatcagat 46024092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 489 - 828
Target Start/End: Complemental strand, 31529728 - 31529389
Alignment:
Q  489 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgca 588  Q
    ||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  31529728 caaagttattatgcataagccatttccttatgcaccatgcataaacacttcacaaccatcagatttgatcgcactctcacaatctgatcgcacacacgca 31529629  T
Q  589 gaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgacattacttctttgtcatt 688  Q
     || ||||| |||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||| ||    
T  31529628 taaactcatcgtagctccgacgtcgacatgattctcacccttgctcgccgctccgacgtgatttatccggccaggttcacgacattacttctttgtcgtt 31529529  T
Q  689 cttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccaccact 788  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  31529528 cttctctcacactgcattacttccaccgattttgtctcatctcggttttcacgagcttgcaaccgccgctccatcgctctccgacgctgcaaccaccact 31529429  T
Q  789 tcccctgcttggactggtcctttcactatttttgctccct 828  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  31529428 tcccctgcttggaccggtcctttcactattttcgctccct 31529389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 485 - 828
Target Start/End: Complemental strand, 51801800 - 51801457
Alignment:
Q  485 agagcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacaca 584  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||   ||||||||||||||    
T  51801800 agagcaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagacttgatcgcgctctcacattctgatcgcacaca 51801701  T
Q  585 cgcagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgacattacttctttgt 684  Q
    ||||||||||||| |||||||||| | |||| |||||||||||||||||| | || || ||||||||||| ||  || |||||||||||||||| |||||    
T  51801700 cgcagaagctcatcgtagctccgacggcgacgtgattctcacccttgctcactgcaccgacgtgatttatccgaccaggttcacgacattacttatttgt 51801601  T
Q  685 cattcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccac 784  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51801600 cgttcttctctcacactgcattacttccaccgattttgtctcatctcggttttcacgagcttgcaaccgccgctccgtcgctctccgacgctgcaaccac 51801501  T
Q  785 cacttcccctgcttggactggtcctttcactatttttgctccct 828  Q
    |||||||||||||||||| ||||||||||||||||| |||||||    
T  51801500 cacttcccctgcttggaccggtcctttcactattttcgctccct 51801457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 490 - 668
Target Start/End: Original strand, 2741040 - 2741215
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgcag 589  Q
    ||||||||||||||||||||||||  ||||| |  ||||||||||| ||||||| ||| ||||||   ||||||||||  ||||||||||||||||||||    
T  2741040 aaagttattatgcataagtcatttctttatgtactctgcataaacatttcacaatcattagattt---cgcactctcacaatctgatcgcacacacgcag 2741136  T
Q  590 aagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcac 668  Q
    |||||||| |||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||| ||| || ||||||    
T  2741137 aagctcatcgtagctccgacgccgacgtgattctcatccttgctcgccgctccgacgtgatttatccggccaggttcac 2741215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 486 - 556
Target Start/End: Original strand, 33097405 - 33097475
Alignment:
Q  486 gagcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttga 556  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  33097405 gagcaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagatttga 33097475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 488 - 561
Target Start/End: Complemental strand, 44688674 - 44688601
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgca 561  Q
    |||||||||| ||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||    
T  44688674 gcaaagttatcatgcataagtcatttccttatgcacgctgcataaacacttcacaaccatcagatttgatcgca 44688601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 557 - 668
Target Start/End: Complemental strand, 28323288 - 28323177
Alignment:
Q  557 tcgcactctcaatatctgatcgcacacacgcagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatac 656  Q
    |||||||||||  |||||||| |||||| |||||||||||| ||||||| || |||||| ||||| |||||||||||||||||| | ||||||||||| |    
T  28323288 tcgcactctcacaatctgatcacacacatgcagaagctcatcgtagctctgacgccgacgtgattttcacccttgctcgccgcttcgacgtgatttatcc 28323189  T
Q  657 ggacatgttcac 668  Q
    || || ||||||    
T  28323188 ggccaggttcac 28323177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 488 - 554
Target Start/End: Original strand, 44260520 - 44260586
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  44260520 gcaaagttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaaccatcagattt 44260586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 37639345 - 37639407
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  37639345 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagat 37639407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 490 - 555
Target Start/End: Complemental strand, 28323394 - 28323329
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 555  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||    
T  28323394 aaagttattatgcataagtcatttttttatgcaccctccataaacactacacaaccatcagatttg 28323329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 35198243 - 35198181
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||    
T  35198243 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacagccatcagat 35198181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 20372213 - 20372262
Alignment:
Q  494 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20372213 ttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 20372262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 51420349 - 51420412
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||||||    
T  51420349 aaagttattatgcataagtcaattctttatgcatcctgcataaaca-ttcacaaccatcagattt 51420412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 500 - 554
Target Start/End: Original strand, 34369674 - 34369728
Alignment:
Q  500 tgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||| |||||||||||||| | |||||||||||||||||||||||||||||    
T  34369674 tgcataagccattttcttatgcaccgtgcataaacacttcacaaccatcagattt 34369728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 490 - 543
Target Start/End: Original strand, 13590471 - 13590524
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  13590471 aaagttattatgcataagtcatttccttatgcaccctgcataaacactttacaa 13590524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 11421598 - 11421662
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||| |||||| |||||||| | |||||||||||||||||||||||||||||    
T  11421598 aaagttatggtgcataaatcatttccttatgcaccgtgcataaacacttcacaaccatcagattt 11421662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 49936999 - 49936935
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  49936999 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 49936935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 50351807 - 50351871
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  50351807 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 50351871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 5077510 - 5077457
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||||||| |||||||  ||||||||| ||||||||||    
T  5077510 aaagttattatgcataagtcatttccttatgcgccctgcataagcacttcacaa 5077457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 13673899 - 13673948
Alignment:
Q  494 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  13673899 ttattatgcataagtcatttccttatgcaccctgtataaacacttcacaa 13673948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 21256834 - 21256777
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||||| |||||||||||||| | ||||||||||||||||||||||    
T  21256834 aaagttatggtgcataagccattttcttatgcaccgtgcataaacacttcacaaccat 21256777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 579
Target Start/End: Complemental strand, 23921935 - 23921871
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgc 579  Q
    |||||||||| ||||||| ||||||| |||||||||||||||| ||||||| |  ||||||||||    
T  23921935 cttatgcatcgtgcataagcacttcataaccatcagatttgattgcactcttacaatctgatcgc 23921871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 24635930 - 24635994
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  24635930 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 24635994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 30788352 - 30788414
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||||||||||||||||||| ||||||||  ||||||  ||| ||||||||||||| ||||    
T  30788352 aaagttattatgcataagtcatttccttatgcagtctgcat--acatttcacaaccatcatattt 30788414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 4097970 - 4097906
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||  |||| |||||||| | |||||||||||||||||||||||| ||||    
T  4097970 aaagttatggtgcataagctatttccttatgcaccgtgcataaacacttcacaaccatcaaattt 4097906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 18618839 - 18618903
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||| | |||| |||||||| | ||||||||||| |||||||||||||||||    
T  18618839 aaagttatggtgcataaattatttccttatgcaccgtgcataaacacatcacaaccatcagattt 18618903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 19897822 - 19897758
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||  |||||||||||||||||    
T  19897822 aaagttatggtgcataagttatttccttatgcaccgtgcataaacatatcacaaccatcagattt 19897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 20434784 - 20434720
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||| ||||||    
T  20434784 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccattagattt 20434720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 23175584 - 23175520
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||  | |||||||||||||||||||||||| ||||    
T  23175584 aaagttatggtgcataagccatttccttatgcgccgtgcataaacacttcacaaccatcaaattt 23175520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 25889090 - 25889026
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||  |||| |||||||| | ||||||||||| |||||||||||||||||    
T  25889090 aaagttatggtgcataagctatttccttatgcaccgtgcataaacacatcacaaccatcagattt 25889026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 28375468 - 28375532
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| ||||  ||||||| | ||||||||||| |||||||||||||||||    
T  28375468 aaagttatggtgcataagttatttctttatgcaccgtgcataaacacatcacaaccatcagattt 28375532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 43452546 - 43452610
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| ||||||| |||||||||    
T  43452546 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaactatcagattt 43452610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 48762393 - 48762329
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||| ||||||    
T  48762393 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccattagattt 48762329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Original strand, 18056812 - 18056849
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  18056812 cttatgcaccgtgcataaacacttcacaaccatcagat 18056849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 2e-70; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 488 - 671
Target Start/End: Original strand, 53594970 - 53595153
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgc 587  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  53594970 gcaaagttattatgcataagccattttcttatgcaccctgcataaacacttcacaaccatcagatttgatcgcactctcacaatctgatcgcacacacgc 53595069  T
Q  588 agaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgac 671  Q
    ||||||| || |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||| || |||||||||    
T  53595070 agaagctaatcgtagctccgacgccgacgtgattctcacccttgctcgccgctccgacgtgatttatccggccaggttcacgac 53595153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 47728392 - 47728456
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47728392 aaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaaccatcagattt 47728456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 37319523 - 37319458
Alignment:
Q  489 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  37319523 caaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacattcatcagattt 37319458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 51682064 - 51682000
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  51682064 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcgcaaccatcagattt 51682000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 490 - 549
Target Start/End: Original strand, 23699331 - 23699390
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 549  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  23699331 aaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23699390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 490 - 549
Target Start/End: Original strand, 23717786 - 23717845
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 549  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  23717786 aaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23717845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 490 - 549
Target Start/End: Original strand, 23736242 - 23736301
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 549  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  23736242 aaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23736301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 490 - 543
Target Start/End: Original strand, 32232995 - 32233048
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  32232995 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 32233048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 545
Target Start/End: Original strand, 23755289 - 23755344
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaacc 545  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  23755289 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaacc 23755344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 26662600 - 26662536
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||| |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  26662600 aaagttattgtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 26662536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 33414075 - 33414011
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  33414075 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 33414011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 488 - 555
Target Start/End: Complemental strand, 39195172 - 39195105
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 555  Q
    |||||||||||||||||||||||||| || ||||| ||||||| ||||||| | |||||||| |||||    
T  39195172 gcaaagttattatgcataagtcatttcctcatgcaccctgcatgaacactttataaccatcaaatttg 39195105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 28300010 - 28299952
Alignment:
Q  494 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||||||||||| |||||| | | ||||||||||||||||||| |||||||    
T  28300010 ttattatgcataagtcatttccttatgtaccatgcataaacacttcacaactatcagat 28299952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 3475469 - 3475405
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  3475469 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 3475405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 9106271 - 9106335
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| | |||||||||||||||    
T  9106271 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagattt 9106335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 19284675 - 19284739
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  19284675 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 19284739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 46237820 - 46237756
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  46237820 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 46237756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 47335036 - 47335100
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  47335036 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 47335100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 34563409 - 34563352
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||||| |||||||||||||| | |||||||||| |||||||||||    
T  34563409 aaagttatggtgcataagccattttcttatgcaccgtgcataaacatttcacaaccat 34563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 41192412 - 41192355
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||||||||||| |||||||| | | ||||||||||||||||||||    
T  41192412 aaagttatggtgcataagtcatttccttatgcaccgtacataaacacttcacaaccat 41192355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 51846842 - 51846785
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||||||||||||||    
T  51846842 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacttcacaaccat 51846785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 2941988 - 2941924
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||| | | ||||||||||| |||||||||||||||||    
T  2941988 aaagttatggtgcataagttatttccttatgtaccgtgcataaacacatcacaaccatcagattt 2941924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 9596042 - 9595978
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||  |||| |||||||| | ||||||||||| |||||||||||||||||    
T  9596042 aaagttatggtgcataagctatttccttatgcaccgtgcataaacacatcacaaccatcagattt 9595978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 10986356 - 10986420
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||| ||| |||||| |||| |||||||| | ||||||||||| ||| |||||||||||||    
T  10986356 aaagttatgatgtataagttatttccttatgcaccgtgcataaacacatcataaccatcagattt 10986420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 30947973 - 30947909
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||| ||||| ||||    
T  30947973 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaatcatcaaattt 30947909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 41568836 - 41568888
Alignment:
Q  491 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||| || |||||||| | |||||||| |||||||||    
T  41568836 aagttattatgcataagtcaattccttatgcaccatgcataaatacttcacaa 41568888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 54379167 - 54379231
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||| ||||    
T  54379167 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcatattt 54379231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 554
Target Start/End: Complemental strand, 19385352 - 19385313
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  19385352 cttatgcaccgtgcataaacacttcacaaccatcagattt 19385313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 554
Target Start/End: Complemental strand, 51362475 - 51362436
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  51362475 cttatgcaccgtgcataaacacttcacaaccatcagattt 51362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Original strand, 50754034 - 50754071
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  50754034 cttatgcaccgtgcataaacacttcacaaccatcagat 50754071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 52987687 - 52987650
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  52987687 cttatgcaccgtgcataaacacttcacaaccatcagat 52987650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 490 - 671
Target Start/End: Original strand, 12355426 - 12355607
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgcag 589  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||||||||||    
T  12355426 aaagttattacgcataagtcattttcttatgcaccctgcataaacacttcacaaccattagatctgatcgcactctcacaatctgatcgcacacacgcag 12355525  T
Q  590 aagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacgac 671  Q
    |||||||| ||||||||    ||||| |||||||||||||||||||||||||| ||||||||||| ||  || |||||||||    
T  12355526 aagctcatcgtagctccatcaccgacgtgattctcacccttgctcgccgctccgacgtgatttatccgtccaggttcacgac 12355607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 687 - 828
Target Start/End: Complemental strand, 38122002 - 38121861
Alignment:
Q  687 ttcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccacca 786  Q
    ||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38122002 ttcttctctcaaactgcattacttccaccgatcttgtctcatctcggttttcacgagcttgcaaccgccgctccgtcgctctccgacgctgcaaccacca 38121903  T
Q  787 cttcccctgcttggactggtcctttcactatttttgctccct 828  Q
    |||||||||||||||| ||||||||||| ||||| |||||||    
T  38121902 cttcccctgcttggaccggtcctttcaccattttcgctccct 38121861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 490 - 669
Target Start/End: Original strand, 2522871 - 2523050
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgcag 589  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||  |||||||||||||||||||  ||||||||||||||||||||    
T  2522871 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaatcaatagatttgatcgcactctcacaatctgatcgcacacacgcag 2522970  T
Q  590 aagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacg 669  Q
    |||||||| |||||||||| |||| | ||||||||||||||||||||||||||  ||||||| || ||| || |||||||    
T  2522971 aagctcatcgtagctccgacgccggcgtgattctcacccttgctcgccgctccggcgtgattaatccggccaggttcacg 2523050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 488 - 669
Target Start/End: Complemental strand, 28698645 - 28698463
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcat-aaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacg 586  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||  || |||||||||||| |    
T  28698645 gcaaagttattatgcataagccattttcttatgcaccctgcattaaacatttcacaaccatcagatttgatcgcactctcacaatttgatcgcacacatg 28698546  T
Q  587 cagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttcacg 669  Q
    ||||||||||| ||||||| || |  ||| |||||||||||||||||||||||||| ||||||||||| ||| || |||||||    
T  28698545 cagaagctcatcgtagctctgacgttgacgtgattctcacccttgctcgccgctccgacgtgatttatccggccaggttcacg 28698463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 687 - 828
Target Start/End: Original strand, 38608121 - 38608262
Alignment:
Q  687 ttcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccacca 786  Q
    ||||||||||||||  |||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||| || |||||||||     
T  38608121 ttcttctctcacaccacattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccg 38608220  T
Q  787 cttcccctgcttggactggtcctttcactatttttgctccct 828  Q
    ||||| |||||||||| |||||||  || ||||| |||||||    
T  38608221 cttcctctgcttggaccggtccttctaccattttcgctccct 38608262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 687 - 828
Target Start/End: Original strand, 38792904 - 38793045
Alignment:
Q  687 ttcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccacca 786  Q
    ||||||||||||||  |||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||| || |||||||||     
T  38792904 ttcttctctcacaccacattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccg 38793003  T
Q  787 cttcccctgcttggactggtcctttcactatttttgctccct 828  Q
    ||||| |||||||||| |||||||  || ||||| |||||||    
T  38793004 cttcctctgcttggaccggtccttctaccattttcgctccct 38793045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 13526735 - 13526661
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 562  Q
    |||||||||||||||||||| ||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  13526735 gcaaagttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagatttgatcgcac 13526661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 13616270 - 13616196
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 562  Q
    |||||||||||||||||||| ||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  13616270 gcaaagttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagatttgatcgcac 13616196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 488 - 549
Target Start/End: Complemental strand, 40247349 - 40247288
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatca 549  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  40247349 gcaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatca 40247288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 30413918 - 30413982
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  30413918 aaagttatgctgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 30413982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 489 - 540
Target Start/End: Complemental strand, 10443633 - 10443582
Alignment:
Q  489 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttca 540  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  10443633 caaagttattatgcataagccatttccttatgcaccctgcataaacacttca 10443582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 562
Target Start/End: Original strand, 30651958 - 30652025
Alignment:
Q  495 tattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 562  Q
    ||||||||||||   |||| |||||||| ||||||||||||||||||||||| || ||||||||||||    
T  30651958 tattatgcataatctatttccttatgcaccctgcataaacacttcacaaccagcaaatttgatcgcac 30652025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 9852274 - 9852331
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||||||||||||||    
T  9852274 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 9852331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 34648190 - 34648133
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||||||||||||||    
T  34648190 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 34648133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 10237358 - 10237422
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  10237358 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 10237422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 19784275 - 19784339
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  19784275 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 19784339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 41099186 - 41099250
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  41099186 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 41099250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 43690644 - 43690708
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  43690644 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 43690708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 15181794 - 15181856
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||||||||    ||| |||||||| |||||||||||||||||||| ||||||||    
T  15181794 aaagttattatgcataatatgtttccttatgcaccctgcataaacacttcacaagcatcagat 15181856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 10650615 - 10650574
Alignment:
Q  327 ggaaaatacttaattgggtacaagggtttgagcacttggttt 368  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  10650615 ggaaaatacttaattgggcacaaggttttgagcacttggttt 10650574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 35302648 - 35302591
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||| | |||||||||||||| | ||||||||||||||||||||||    
T  35302648 aaagttatggtgcataggacattttcttatgcaccgtgcataaacacttcacaaccat 35302591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 7857684 - 7857748
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| |||||||||||||  | ||||||||||| |||||| ||||||||||    
T  7857684 aaagttatggtgcataagccattttcttatgcgccgtgcataaacacatcacaatcatcagattt 7857748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 15227034 - 15227098
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| | |||||||||||||||    
T  15227034 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacattacaaccatcagattt 15227098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 554
Target Start/End: Complemental strand, 34633371 - 34633319
Alignment:
Q  502 cataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  34633371 cataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 34633319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 41451109 - 41451173
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||| ||||||||||    
T  41451109 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacgtcacaatcatcagattt 41451173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 558
Target Start/End: Original strand, 42433729 - 42433772
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagatttgatc 558  Q
    |||||||| | ||||||| |||||||||||||||||||||||||    
T  42433729 cttatgcaccgtgcataagcacttcacaaccatcagatttgatc 42433772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 1671803 - 1671870
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaa---cacttcacaaccatcagattt 554  Q
    |||||||||||||||||  |||||||||||||| | ||| ||||   |||||||||| ||||||||||    
T  1671803 aaagttattatgcataaaacattttcttatgcaccatgcttaaacatcacttcacaatcatcagattt 1671870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 4836738 - 4836701
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  4836738 cttatgcaccgtgcataaacacttcacaaccatcagat 4836701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 4842183 - 4842146
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  4842183 cttatgcaccgtgcataaacacttcacaaccatcagat 4842146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Original strand, 7614096 - 7614133
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  7614096 cttatgcaccatgcataaacacttcacaaccatcagat 7614133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Original strand, 8550532 - 8550569
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  8550532 cttatgcaccgtgcataaacacttcacaaccatcagat 8550569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 32987482 - 32987445
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  32987482 cttatgcaccgtgcataaacacttcacaaccatcagat 32987445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 488 - 667
Target Start/End: Complemental strand, 43852684 - 43852506
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgc 587  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| |||||| || |||||||||||||||||||||||  ||||||||| |||||| |    
T  43852684 gcaaagttattatgcataagtcattttcttatgca-catgcataaatacttcataatcatcagatttgatcgcactctcacaatctgatcgaacacacac 43852586  T
Q  588 agaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttca 667  Q
    |||||||||| |||||||||| || ||| ||||||||||||||| |||||||||| ||||||||||| ||| || |||||    
T  43852585 agaagctcatcgtagctccgacgctgacgtgattctcacccttgttcgccgctccgacgtgatttatccggccaggttca 43852506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 687 - 828
Target Start/End: Complemental strand, 28731576 - 28731435
Alignment:
Q  687 ttcttctctcacactgcattacttccaccgattttgtctcatctcagttttcacgagcttgaaaccgccgctccgtcgctctccgacgctgcaaccacca 786  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||    
T  28731576 ttcttctctcacactgcattacttccacctatcttgtctcatctcggttttcacgagcttgcaaccgccgctcctacgctctctgacgctgcaaccacca 28731477  T
Q  787 cttcccctgcttggactggtcctttcactatttttgctccct 828  Q
    |||||| ||||||||| ||||||||||| ||||| |||||||    
T  28731476 cttcccttgcttggaccggtcctttcaccattttcgctccct 28731435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 489 - 562
Target Start/End: Original strand, 16298924 - 16298997
Alignment:
Q  489 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 562  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  16298924 caaagttattatgcataagtcatttccttatgcaccctgcataatcacttcacaaccatcagatttgatcgcac 16298997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 490 - 555
Target Start/End: Complemental strand, 25574190 - 25574125
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 555  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  25574190 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagatttg 25574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 490 - 548
Target Start/End: Original strand, 24686576 - 24686634
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatc 548  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  24686576 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatc 24686634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 10472501 - 10472565
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | |||||||||| ||||||||||||||||||    
T  10472501 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacatttcacaaccatcagattt 10472565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 13635787 - 13635723
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  13635787 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 13635723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 49492574 - 49492510
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  49492574 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 49492510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 26578241 - 26578187
Alignment:
Q  500 tgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||| |||||  ||||||||| |||||||||||||||||||||||||||||    
T  26578241 tgcataagccatttctttatgcatcgtgcataaacacttcacaaccatcagattt 26578187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 587
Target Start/End: Original strand, 38010145 - 38010243
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt-gatcgcactctcaatatctgatcgcacacacgc 587  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||||||||||||||  |||||   || |||| |||  ||||||||||||||||||    
T  38010145 aaagttatggtgcataagtcatttccttatgcaccatgcataaacacttcacaaccatttgatttccttcacactttcacaatctgatcgcacacacgc 38010243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 50563790 - 50563729
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    ||||||||||||||||||  |||| | |||||| |||||||||||||||||||||||||||||    
T  50563790 aaagttattatgcataagatattt-catatgcaccctgcataaacacttcacaaccatcagat 50563729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 1621879 - 1621943
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  1621879 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 1621943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 6386590 - 6386539
Alignment:
Q  505 aagtcattttcttatgc--atcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  6386590 aagtcattttcttatgcgcaccctgcataaacacttcacaaccatcagattt 6386539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 15051198 - 15051134
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  15051198 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 15051134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 30597703 - 30597767
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  30597703 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 30597767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 36011847 - 36011911
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  36011847 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 36011911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 46672443 - 46672507
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  46672443 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 46672507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 51921327 - 51921263
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  51921327 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 51921263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 53441324 - 53441388
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||||| ||||||||||| |||||||||||| ||||    
T  53441324 aaagttatggtgcataagttatttccttatgcatcgtgcataaacacatcacaaccatcaaattt 53441388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 55765485 - 55765549
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| | |||||||||||||||    
T  55765485 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagattt 55765549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 1729677 - 1729615
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    ||||||||  ||||||||||||||  |||| || | |||||||||||||||||||||||||||    
T  1729677 aaagttatggtgcataagtcatttctttatacaccgtgcataaacacttcacaaccatcagat 1729615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 547
Target Start/End: Original strand, 30357823 - 30357868
Alignment:
Q  502 cataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||    
T  30357823 cataagtcatttccttatgcaccgtgcataaacacttcacaaccat 30357868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 2848170 - 2848118
Alignment:
Q  491 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||| || |||||||| |||||||||| |||| ||||    
T  2848170 aagttattatgcataagtcagttccttatgcaccctgcataaatactttacaa 2848118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 11785978 - 11786042
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||  ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  11785978 aaagttatggtgcataaaccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 11786042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 11798145 - 11798209
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||  ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  11798145 aaagttatggtgcataaaccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 11798209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 27865799 - 27865735
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| | |||||| | ||||||||||| |||||||||||||||||    
T  27865799 aaagttatagtgcataagccatttccatatgcaccgtgcataaacacatcacaaccatcagattt 27865735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 35291610 - 35291546
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||| ||||||    
T  35291610 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccataagattt 35291546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 49426119 - 49426055
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||| ||||    
T  49426119 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcaaattt 49426055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 558
Target Start/End: Complemental strand, 29826643 - 29826600
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagatttgatc 558  Q
    |||||||| | ||||||| |||||||||||||||||||||||||    
T  29826643 cttatgcaccgtgcataagcacttcacaaccatcagatttgatc 29826600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 558
Target Start/End: Original strand, 50643771 - 50643814
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagatttgatc 558  Q
    |||||||| | ||||||||||||||| |||||||||||||||||    
T  50643771 cttatgcaccgtgcataaacacttcataaccatcagatttgatc 50643814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 489 - 519
Target Start/End: Original strand, 48740608 - 48740638
Alignment:
Q  489 caaagttattatgcataagtcattttcttat 519  Q
    |||||||||||||||||||||||||||||||    
T  48740608 caaagttattatgcataagtcattttcttat 48740638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Original strand, 4168386 - 4168423
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  4168386 cttatgcaccgtgcataaacacttcacaaccatcagat 4168423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 26447449 - 26447412
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  26447449 cttatgcaccgtgcataaacacttcacaaccatcagat 26447412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 36621738 - 36621701
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  36621738 cttatgcaccgtgcataaacacttcacaaccatcagat 36621701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 755 - 784
Target Start/End: Original strand, 50643827 - 50643856
Alignment:
Q  755 cgctccgtcgctctccgacgctgcaaccac 784  Q
    ||||||||||||||||||||||||||||||    
T  50643827 cgctccgtcgctctccgacgctgcaaccac 50643856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 488 - 654
Target Start/End: Complemental strand, 16142139 - 16141973
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcactctcaatatctgatcgcacacacgc 587  Q
    ||||| |||||||||| ||| ||||| ||||||||  ||||||||||||||||||||||| |||||||||||||| ||||  || |||| ||||||| ||    
T  16142139 gcaaatttattatgcacaagccatttccttatgcacgctgcataaacacttcacaaccattagatttgatcgcacactcacaatttgattgcacacatgc 16142040  T
Q  588 agaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttat 654  Q
     ||||||||| ||||||| || || ||| ||||||||||||||||| ||| |||| |||||||||||    
T  16142039 ggaagctcatggtagctctgaggctgacgtgattctcacccttgcttgccactccgacgtgatttat 16141973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 573 - 667
Target Start/End: Complemental strand, 40853680 - 40853586
Alignment:
Q  573 tgatcgcacacacgcagaagctcattgtagctccgatgccgacatgattctcacccttgctcgccgctccaacgtgatttatacggacatgttca 667  Q
    ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| || |||||||| ||| || |||||    
T  40853680 tgatcgcacacacgcagaagctcatcgtagctccgacgccgacgtgattctcacccttgctcgccgctccgacctgatttatccggccaggttca 40853586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 488 - 562
Target Start/End: Original strand, 39548044 - 39548118
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 562  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  39548044 gcaaagttattatacataagtcatttccttatgcaccctgcataaacacttcacaaccatcaaatttgatcgcac 39548118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 490 - 555
Target Start/End: Complemental strand, 36636999 - 36636934
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 555  Q
    ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  36636999 aaagttattatgcataagtcattttcttatgtaccctacataaacacttcacaaccatcagatttg 36636934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 5098720 - 5098784
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  5098720 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcaaattt 5098784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 488 - 555
Target Start/End: Complemental strand, 13081924 - 13081857
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttg 555  Q
    ||||||||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||| ||||||    
T  13081924 gcaaagttattatgcataagtcatttcattatgcaccctacataaacacttcacaaccatctgatttg 13081857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 491 - 546
Target Start/End: Complemental strand, 40853740 - 40853685
Alignment:
Q  491 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaacca 546  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  40853740 aagttattatgcataagccatttccttatgcatcctgcataaacacttcacaacca 40853685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 25995290 - 25995354
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||||||||||||| ||||| ||||||||  ||||||||| ||||||||||||||||||||    
T  25995290 aaagttattatgcataagacatttccttatgcactctgcataaatacttcacaaccatcagattt 25995354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 8149835 - 8149899
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||    
T  8149835 aaagttatggtgcataagccatttccttatgcatcgtgcataaacacatcacaaccatcagattt 8149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 8154459 - 8154523
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||    
T  8154459 aaagttatggtgcataagccatttccttatgcatcgtgcataaacacatcacaaccatcagattt 8154523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 4281850 - 4281788
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||||||||| ||||| |||||| |  ||| ||||||||||||||||||||||||    
T  4281850 aaagttattatgcataagacatttccttatgtactctgtataaacacttcacaaccatcagat 4281788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 1292241 - 1292177
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| ||||||||||||| | | ||||||||| |||||||||||||||||    
T  1292241 aaagttatggtgcataagttattttcttatgcaccgtacataaacacatcacaaccatcagattt 1292177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 15016628 - 15016564
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  15016628 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 15016564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 24024685 - 24024633
Alignment:
Q  491 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||| || |||||||| | ||||||||||||||||||    
T  24024685 aagttattatgcataagtcaattccttatgcaccatgcataaacacttcacaa 24024633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 39355039 - 39355103
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  39355039 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 39355103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 7487316 - 7487252
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||  |||| |||||||| | ||||||||||| |||||||||||||||||    
T  7487316 aaagttatggtgcataagctatttccttatgcaccgtgcataaacacatcacaaccatcagattt 7487252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 9143589 - 9143653
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||| ||||||||||    
T  9143589 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaatcatcagattt 9143653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 34464715 - 34464779
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||  |||||||||||||||||    
T  34464715 aaagttatggtgcataagttatttccttatgcaccgtgcataaacatatcacaaccatcagattt 34464779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 490 - 548
Target Start/End: Original strand, 2263577 - 2263635
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatc 548  Q
    ||||||||  |||||||| |||||  ||||||| | |||||||||||||||||||||||    
T  2263577 aaagttatggtgcataagccatttctttatgcaccgtgcataaacacttcacaaccatc 2263635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 18298148 - 18298111
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  18298148 cttatgcaccgtgcataaacacttcacaaccatcagat 18298111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 18762871 - 18762928
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| ||||||||||    
T  18762871 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccat 18762928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 41346102 - 41346045
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||||| |||||||||||||| | |  |||||||||||||||||||    
T  41346102 aaagttatggtgcataagccattttcttatgcaccgtatataaacacttcacaaccat 41346045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 16968087 - 16968013
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 562  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  16968087 gcaacgttattatgcataagccattttcttatgcaccctgcataaacacttcataaccatcaaatttgatcgcac 16968013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 4338683 - 4338610
Alignment:
Q  489 caaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagatttgatcgcac 562  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||    
T  4338683 caaagttgttatgcataagccattttcttatgcaccctgcataaacacttcaaaatcatcagatttgatcgcac 4338610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 27079991 - 27079939
Alignment:
Q  491 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  27079991 aagttattatgcataagtcattttcttatgcaccgtgcataaacacttcacaa 27079939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 18611192 - 18611254
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||||||||| |||||  |||||||  ||||||||||||||||||||||||||||    
T  18611192 aaagttattatgcataagacatttctttatgcactctgcataaacacttcacaaccatcagat 18611254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 490 - 540
Target Start/End: Original strand, 32556348 - 32556398
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttca 540  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  32556348 aaagttattatgcataagtcattttcttatgcaccctgcataaacaattca 32556398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 31216666 - 31216730
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| |||||||||||||||||    
T  31216666 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagattt 31216730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 554
Target Start/End: Original strand, 6900805 - 6900871
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  6900805 gcaaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 6900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 30908656 - 30908713
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccat 547  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||||||||||||||    
T  30908656 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 30908713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 1449546 - 1449610
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  1449546 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 1449610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 1536958 - 1536894
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  1536958 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 1536894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 7089086 - 7089150
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||| ||||||||||    
T  7089086 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaatcatcagattt 7089150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 34870148 - 34870084
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||| | || |||||||| |||||||||||||||||    
T  34870148 aaagttatggtgcataagccatttccttatgcaccatgtataaacacatcacaaccatcagattt 34870084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Original strand, 35119263 - 35119300
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  35119263 cttatgcaccgtgcataaacacttcacaaccatcagat 35119300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 33868159 - 33868223
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  33868159 aaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatctgattt 33868223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 16668856 - 16668794
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  16668856 aaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagat 16668794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 18465618 - 18465556
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||    
T  18465618 aaagttattatgcataagacatttcattatgcatcctgcataaacacttcacaaccatcagat 18465556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 551
Target Start/End: Original strand, 4674965 - 4675025
Alignment:
Q  491 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcaga 551  Q
    |||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  4674965 aagttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaaccatcaga 4675025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 16552701 - 16552637
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| ||||    
T  16552701 aaagttattatgcataagtcatttccttatgcaccatgcataaacacttcacaaccatcatattt 16552637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 39056514 - 39056461
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  39056514 aaagttattatgcataaatcattttcttatgcaccctgcttaaacacttcacaa 39056461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 15913192 - 15913140
Alignment:
Q  491 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  15913192 aagttattatgcataagtcagttccttatgcatcctgcataaacactttacaa 15913140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 26637899 - 26637835
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| |||||||||||||| | ||||||||||| |||||||||||||||||    
T  26637899 aaagttatggtgcataagccattttcttatgcaccgtgcataaacacatcacaaccatcagattt 26637835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 15024374 - 15024333
Alignment:
Q  327 ggaaaatacttaattgggtacaagggtttgagcacttggttt 368  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  15024374 ggaaaatacttaattgggcacaagggtttgagcacttggttt 15024333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 7183142 - 7183194
Alignment:
Q  491 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||| || ||||||||  |||||||||||||||||||    
T  7183142 aagttattatgcataagtcagttccttatgcacactgcataaacacttcacaa 7183194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 13552987 - 13553051
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  13552987 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 13553051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 14940418 - 14940354
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  14940418 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 14940354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 15416668 - 15416732
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | ||||||||||| |||||||||||||||||    
T  15416668 aaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagattt 15416732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 30783439 - 30783503
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| || ||||||||||||||    
T  30783439 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacatcgcaaccatcagattt 30783503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 3884097 - 3884033
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||||||||| |||||||| | ||||||||||| | |||||||||| ||||    
T  3884097 aaagttatggtgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcaaattt 3884033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 14394472 - 14394536
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  ||||||||| |||| |||||||| | |||||||| || |||||||||||||||||    
T  14394472 aaagttatggtgcataagttatttccttatgcaccgtgcataaatacatcacaaccatcagattt 14394536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 543
Target Start/End: Original strand, 6054367 - 6054422
Alignment:
Q  488 gcaaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    ||||||| |||||||||||||||||||| ||||||||||  |||| || |||||||    
T  6054367 gcaaagtcattatgcataagtcattttcctatgcatcctatataagcatttcacaa 6054422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Original strand, 13362798 - 13362835
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  13362798 cttatgcaccgtgcataaacacttcacaaccatcagat 13362835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 25017254 - 25017217
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagat 552  Q
    |||||||| | |||||||||||||||||||||||||||    
T  25017254 cttatgcaccgtgcataaacacttcacaaccatcagat 25017217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 490 - 543
Target Start/End: Original strand, 209330 - 209383
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  209330 aaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 209383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 171513 - 171562
Alignment:
Q  494 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  171513 ttattatgcataagtcatttccttatgcaccctgtataaacacttcacaa 171562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 51367 - 51416
Alignment:
Q  494 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51367 ttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 51416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 1612 - 1661
Alignment:
Q  494 ttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1612 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 1661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 738 - 674
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  738 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 554
Target Start/End: Original strand, 33688 - 33752
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| |||||||| | ||||||||||| |||||||||||||||||    
T  33688 aaagttatggtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagattt 33752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 540
Target Start/End: Original strand, 450206 - 450256
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttca 540  Q
    |||||||||||||||||||||||| ||||| || | |||||||||||||||    
T  450206 aaagttattatgcataagtcatttccttatacaccttgcataaacacttca 450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 543
Target Start/End: Original strand, 119206 - 119259
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    ||||||||||| ||||||||||||   |||||| ||||||||||||||||||||    
T  119206 aaagttattatacataagtcatttctatatgcaccctgcataaacacttcacaa 119259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 7403 - 7351
Alignment:
Q  491 aagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaa 543  Q
    |||||||||||||||| |||  | |||||||| ||||||||||||||||||||    
T  7403 aagttattatgcataaatcagatccttatgcaccctgcataaacacttcacaa 7351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 490 - 554
Target Start/End: Complemental strand, 8483 - 8419
Alignment:
Q  490 aaagttattatgcataagtcattttcttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    ||||||||  |||||||| ||||| ||||||||   ||||||||||| |||||||||||||||||    
T  8483 aaagttatggtgcataagccatttccttatgcactgtgcataaacacatcacaaccatcagattt 8419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 554
Target Start/End: Complemental strand, 25269 - 25230
Alignment:
Q  515 cttatgcatcctgcataaacacttcacaaccatcagattt 554  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  25269 cttatgcaccgtgcataaacacttcacaaccatcagattt 25230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University