View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18425_low_20 (Length: 310)

Name: NF18425_low_20
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18425_low_20
NF18425_low_20
[»] chr3 (6 HSPs)
chr3 (16-258)||(21119589-21119831)
chr3 (88-174)||(21127007-21127091)
chr3 (259-298)||(3476188-3476227)
chr3 (259-298)||(4116946-4116985)
chr3 (259-298)||(30341200-30341239)
chr3 (258-298)||(30338095-30338135)
[»] scaffold0060 (1 HSPs)
scaffold0060 (259-298)||(37734-37773)
[»] chr4 (5 HSPs)
chr4 (257-298)||(41393970-41394011)
chr4 (258-298)||(4207153-4207193)
chr4 (258-298)||(13695869-13695909)
chr4 (258-298)||(13711482-13711522)
chr4 (258-298)||(9763268-9763308)
[»] chr8 (1 HSPs)
chr8 (258-298)||(42513843-42513883)
[»] chr7 (9 HSPs)
chr7 (258-298)||(12935196-12935236)
chr7 (258-298)||(43893654-43893694)
chr7 (258-298)||(47176491-47176531)
chr7 (259-298)||(2233948-2233987)
chr7 (259-298)||(19308872-19308911)
chr7 (259-298)||(32211961-32212000)
chr7 (259-298)||(42572712-42572751)
chr7 (258-298)||(17496212-17496252)
chr7 (258-298)||(17556962-17557002)
[»] chr6 (7 HSPs)
chr6 (258-298)||(2817396-2817436)
chr6 (258-298)||(24190649-24190689)
chr6 (258-298)||(34142893-34142933)
chr6 (258-298)||(34155509-34155549)
chr6 (259-298)||(6727773-6727812)
chr6 (259-298)||(31983587-31983626)
chr6 (259-298)||(34376576-34376615)
[»] scaffold0594 (1 HSPs)
scaffold0594 (259-298)||(8530-8569)
[»] scaffold0166 (2 HSPs)
scaffold0166 (259-298)||(12982-13021)
scaffold0166 (258-298)||(18438-18478)
[»] chr5 (4 HSPs)
chr5 (259-298)||(24770601-24770640)
chr5 (257-298)||(36254629-36254670)
chr5 (259-298)||(1413068-1413108)
chr5 (258-298)||(24776054-24776094)
[»] chr2 (1 HSPs)
chr2 (261-298)||(28751019-28751056)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 21119831 - 21119589
Alignment:
Q  16 tcttcaatatttttctaattacagtataataacattcacgatattcgcaatgaattatagcagaatgaattatttgaataatcaatagtgtcagacaatg 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21119831 tcttcaatatttttctaattatagtataataacattcacgatattcgcaatgaattatagcagaatgaattatttgaataatcaatagtgtcagacaatg 21119732  T
Q  116 ttggcatgtacttggtcactgtcagtaatacattcatggtttacattgacaatgttggtnnnnnnnttagcagtaacattcatattttgtagttttatta 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  21119731 ttggcatgtacttggtcactgtcaataatacattcatggtttacattgacaatgttggtaaaaaaattagcagtaacattcatattttgtagttttatta 21119632  T
Q  216 acaatcaaggaaaattatgtacaaacctagtcaaaaagaagtt 258  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  21119631 acaatcaaggaaaattatgtacaaaccaagtcaaaaagaagtt 21119589  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 21127091 - 21127007
Alignment:
Q  88 tttgaataatcaatagtgtcagacaatgttggcatgtacttggtcactgtcagtaatacattcatggtttacattgacaatgttggt 174  Q
    |||||||||||||||||||| |||   |  |||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||    
T  21127091 tttgaataatcaatagtgtctgactcag--ggcatgtacttggtcactgtcactaacacattcatgatttacaatgacaatgttggt 21127007  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 3476188 - 3476227
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  3476188 tgttggaacactagtgtatattggcaaaaacttggagtat 3476227  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 4116946 - 4116985
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  4116946 tgttggaacactagtgtatattggcaaaaacttggagtat 4116985  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 30341200 - 30341239
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  30341200 tgttggaacactagtgtatattggcaaaaacttggagtat 30341239  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 30338095 - 30338135
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||||  ||||||||||||||||||| |||||||||    
T  30338095 ttgttggaacagtagtgtatattggcaaaaacttggagtat 30338135  T

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Target: scaffold0060 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 37773 - 37734
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  37773 tgttggaacactagtgtatattggcaaaaatttggagtat 37734  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 41394011 - 41393970
Alignment:
Q  257 tttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  41394011 tttgttggaacactagtgtatattggcaaaaacttggagtat 41393970  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 4207193 - 4207153
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  4207193 ttgttggaacactagtgtatattggcaaaaacttggagtat 4207153  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 13695909 - 13695869
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  13695909 ttgttggaacactagtgtatattggcaaaaacttggagtat 13695869  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 13711522 - 13711482
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  13711522 ttgttggaacactagtgtatattggcaaaaacttggagtat 13711482  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 9763268 - 9763308
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||| ||| |||||||||    
T  9763268 ttgttggaacactagtgtatattggcataaacttggagtat 9763308  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 42513843 - 42513883
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  42513843 ttgttggaacactagtgtatattggcaaaaacttggagtat 42513883  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 12935236 - 12935196
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  12935236 ttgttggaacactagtgtatattggcaaaaacttggagtat 12935196  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 43893694 - 43893654
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  43893694 ttgttggaacactagtgtatattggcaaaaacttggagtat 43893654  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 47176491 - 47176531
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  47176491 ttgttggaacactagtgtatattggcaaaaacttggagtat 47176531  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 2233948 - 2233987
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  2233948 tgttggaaccctagtgtatattggaaaaaacttggagtat 2233987  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 19308872 - 19308911
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  19308872 tgttggaacactagtgtatattggcaaaaacttggagtat 19308911  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 32211961 - 32212000
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  32211961 tgttggaacactagtgtatattggcaaaaacttggagtat 32212000  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 42572751 - 42572712
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  42572751 tgttggaacactagtgtatattggcaaaaacttggagtat 42572712  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 17496252 - 17496212
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| ||||| |||||||||||||| |||||||||    
T  17496252 ttgttggaacactagtatatattggcaaaaacttggagtat 17496212  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 17556962 - 17557002
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| ||||| |||||||||||||| |||||||||    
T  17556962 ttgttggaacactagtatatattggcaaaaacttggagtat 17557002  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 2817396 - 2817436
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  2817396 ttgttggaacactagtgtatattggcaaaaacttggagtat 2817436  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 24190649 - 24190689
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  24190649 ttgttggaacactagtgtatattggcaaaaacttggagtat 24190689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 34142933 - 34142893
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  34142933 ttgttggaacactagtgtatattggcaaaaacttggagtat 34142893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 34155549 - 34155509
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  34155549 ttgttggaacactagtgtatattggcaaaaacttggagtat 34155509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 6727773 - 6727812
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  6727773 tgttggaacactagtgtatattggcaaaaacttggagtat 6727812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 31983626 - 31983587
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  31983626 tgttggaacactagtgtatattggcaaaaacttggagtat 31983587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 34376615 - 34376576
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  34376615 tgttggaacactagtgtatattggcaaaaacttggagtat 34376576  T

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Target: scaffold0594 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 8530 - 8569
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  8530 tgttggaacactagtgtatattggcaaaaacttggagtat 8569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 12982 - 13021
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  12982 tgttggaacactagtgtatattggcaaaaacttggagtat 13021  T

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Target: scaffold0166; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 18438 - 18478
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| || ||||||    
T  18438 ttgttggaacactagtgtatattggcaaaaacttagagtat 18478  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 24770601 - 24770640
Alignment:
Q  259 tgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  24770601 tgttggaacactagtgtatattggcaaaaacttggagtat 24770640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 36254670 - 36254629
Alignment:
Q  257 tttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||| ||| |||||||||||||||||||| |||||||||    
T  36254670 tttgttgaaacactagtgtatattggcaaaaacttggagtat 36254629  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 1413068 - 1413108
Alignment:
Q  259 tgttggaaccctagtgtatatt-ggcaaaaatttggagtat 298  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  1413068 tgttggaaccctggtgtatattgggcaaaaatttggagtat 1413108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 24776054 - 24776094
Alignment:
Q  258 ttgttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    |||||||||| |||||||||||||||||||| || ||||||    
T  24776054 ttgttggaacactagtgtatattggcaaaaactttgagtat 24776094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 28751019 - 28751056
Alignment:
Q  261 ttggaaccctagtgtatattggcaaaaatttggagtat 298  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  28751019 ttggaacactagtgtatattggcaaaaacttggagtat 28751056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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