View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18425_low_21 (Length: 305)
Name: NF18425_low_21
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 9550497 - 9550723
Alignment:
| Q |
23 |
atctctctaaaactaacatcatccaactaaggtttaaagtcaaaa--ctcttttatacctttaggataattcaatgttatatagtttgtaacttgatcta |
120 |
Q |
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| T |
9550497 |
atctctctaaaactatcatcatccaaataaggtttaaagtcaaaaaactcttttatacctttaggataattcaatgttatatagttcgtaacttgatcta |
9550596 |
T |
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| Q |
121 |
tccaaaaagactaatgtaattaaaataaatcaattttaatttagtggccatttcaaaatttcattac-tttaatatccaattcctataacctaatattcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9550597 |
tccaaaaagactaatgtaattaaaataaatcaattttaatttagtggccatttcaaaatttcattacttttaatatccaattcctataacctaatattcc |
9550696 |
T |
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| Q |
220 |
accgactaaattagcgcttccatattt |
246 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9550697 |
accgactaaattagcgcttccatattt |
9550723 |
T |
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