View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18425_low_23 (Length: 267)

Name: NF18425_low_23
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18425_low_23
NF18425_low_23
[»] chr3 (8 HSPs)
chr3 (126-248)||(11754169-11754291)
chr3 (23-132)||(11754360-11754469)
chr3 (126-222)||(9314924-9315020)
chr3 (138-226)||(11688538-11688626)
chr3 (72-122)||(9315108-9315158)
chr3 (25-84)||(9315158-9315217)
chr3 (72-122)||(11688687-11688737)
chr3 (23-84)||(11688737-11688798)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 126 - 248
Target Start/End: Complemental strand, 11754291 - 11754169
Alignment:
Q  126 tttatcatctgctgaaaatggatctccatcctctcctgtggctccaaagttttccgacacagctgttaattctgcatcagaaaagaaagaatatccaatt 225  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11754291 tttatcatctgctgaaaatgaatctccatcctctcctgtggctccaaagtttaccgacacagctgttaattctgcatcagaaaagaaagaatatccaatt 11754192  T
Q  226 gcacttccaagtgtagaaagcag 248  Q
    |||||||||||||||||||||||    
T  11754191 gcacttccaagtgtagaaagcag 11754169  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 11754469 - 11754360
Alignment:
Q  23 gcgctgatatcaattgtgtggatgctaatggaaaccaaccagtggatgttattgttgttcctcataagctcgaggttgtgaaaacaagtcttgaagaact 122  Q
    |||||||||||||| |||||||||| ||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  11754469 gcgctgatatcaatcgtgtggatgcaaatggaaaccatccggtggatgttatggttgttccacataagctcgaggttgtgaaaacaagtcttgaagaact 11754370  T
Q  123 gcttttatca 132  Q
    ||||||||||    
T  11754369 gcttttatca 11754360  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 9315020 - 9314924
Alignment:
Q  126 tttatcatctgctgaaaatggatctccatcctctcctgtggctccaaagttttccgacacagctgttaattctgcatcagaaaagaaagaatatcca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||| |||||||||||||||| ||||||    
T  9315020 tttatcatctgctgaaaatggatctccatcctctcctgtggctcccaagtttacagatacagctgttaattctacatcagaaaagaaagagtatcca 9314924  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 11688626 - 11688538
Alignment:
Q  138 tgaaaatggatctccatcctctcctgtggctccaaagttttccgacacagctgttaattctgcatcagaaaagaaagaatatccaattg 226  Q
    |||||| || |||||||||||||| ||||||||||||||  ||||||||||||||| |||| || ||||||||||| ||||||||||||    
T  11688626 tgaaaaggggtctccatcctctcccgtggctccaaagttgaccgacacagctgttagttctacaccagaaaagaaaaaatatccaattg 11688538  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 9315158 - 9315108
Alignment:
Q  72 tattgttgttcctcataagctcgaggttgtgaaaacaagtcttgaagaact 122  Q
    |||||||||||||||||||||||| | ||| ||||||| ||||||||||||    
T  9315158 tattgttgttcctcataagctcgaaggtgttaaaacaattcttgaagaact 9315108  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 9315217 - 9315158
Alignment:
Q  25 gctgatatcaattgtgtggatgctaatggaaaccaaccagtggatgttattgttgttcct 84  Q
    ||||||||||||| ||||||||||||||| || |  || ||||||||||| |||||||||    
T  9315217 gctgatatcaattctgtggatgctaatgggaaacgccctgtggatgttatcgttgttcct 9315158  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 11688737 - 11688687
Alignment:
Q  72 tattgttgttcctcataagctcgaggttgtgaaaacaagtcttgaagaact 122  Q
    |||||||||||| ||||||||||| || ||||||| |||||||||| ||||    
T  11688737 tattgttgttccccataagctcgaagtcgtgaaaagaagtcttgaacaact 11688687  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 11688798 - 11688737
Alignment:
Q  23 gcgctgatatcaattgtgtggatgctaatggaaaccaaccagtggatgttattgttgttcct 84  Q
    ||||||| ||| ||||||| ||||||||||| ||||  ||| |||||||||||||| |||||    
T  11688798 gcgctgacatctattgtgtcgatgctaatgggaaccgtccaatggatgttattgttcttcct 11688737  T

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