View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18425_low_5 (Length: 662)
Name: NF18425_low_5
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 268 - 644
Target Start/End: Complemental strand, 31714241 - 31713865
Alignment:
| Q |
268 |
tcattgaataagttgttaaatttaggctcacgcgctgcataatcccatattaacatcccatgtgtagttccaaatgttgaaggatcatcggtttttaacc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31714241 |
tcattgaataagttgttaaatttaggctcacgcgccgcataatcccacatcgacatcccatgtgtagttccaaatgttgaaggatcatcagtttttaacc |
31714142 |
T |
|
| Q |
368 |
aactggacatttcatgccacgggtttgccaaaattggatgtagtatggcttgcaaaaatggtgtcacactcatggggtgatccttaagcaacagtataga |
467 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31714141 |
aaccggacatttcatgccacgggtttgccaaaattggatgtagtacggcttgcaaaaatggtgtcacactcatggggtgatccttaagcaacagtataga |
31714042 |
T |
|
| Q |
468 |
ttcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcatagaagaagccagattgagtcatgattcgcattaagcgatagatg |
567 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31714041 |
ttcatcggttagaatataatcgatttctagctcattctcagtaacatcgtgttcatagaagaagccagattgagtcatgatttgcattaagcgatagatg |
31713942 |
T |
|
| Q |
568 |
caggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtat |
644 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31713941 |
caggatttttttgaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtat |
31713865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 39 - 647
Target Start/End: Complemental strand, 31703038 - 31702430
Alignment:
| Q |
39 |
aaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacatgtggaagatcaaacacagtgcggtccatttgtgggaatgat |
138 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||| |
|
|
| T |
31703038 |
aaacatgtctccaccaacatagtttagattctcactaccttgcaagccatcaacaacatgtggtagatcaaatacactaaactccatttgtgggaatgat |
31702939 |
T |
|
| Q |
139 |
ttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaacatttcaccacacttctcaatcaccacacttg |
238 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| | | | | ||||||||||||| || | | | |
|
|
| T |
31702938 |
ttagcaagggcctttgccatggtccctgtgccacctccaacatcaaccaatgactccaacccattgaatactcccctgcacttctcaatcaacaaattgg |
31702839 |
T |
|
| Q |
239 |
tgaccaatcgagcatcactcaccattgcatcattgaataagttgttaaatttaggctcacgcgctgcataatcccatattaacatcccatgtgtagttcc |
338 |
Q |
| |
|
| || ||||||| |||||| |||| | ||||||||||||||| ||||||| | |||| ||| |||| ||||||| ||||||| ||||| ||| | |
|
|
| T |
31702838 |
tcactaatcgagtatcacttgccatggactcattgaataagttgctaaatttggagtcacacgcaacatattcccataacaacatcctgtgtgtcgtttc |
31702739 |
T |
|
| Q |
339 |
aaatgttgaaggatcatcggtttttaaccaactggacatttcatgccacgggtttgccaaaattggatgtagtatggcttgcaaaaatggtgtcacactc |
438 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| | || | || ||||||||| |||| ||||| ||||| || || || || | |||||||||||| ||| |
|
|
| T |
31702738 |
aaatgttgtaggatcatcattttttaaccaagtagagaattgatgccacggatttgtcaaaactggatcgagcatcgcgtgtacaaatggtgtcacgctc |
31702639 |
T |
|
| Q |
439 |
atggggtgatccttaagcaacagtatagattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcatagaagaagccagatt |
538 |
Q |
| |
|
|| || | |||||||| || | ||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||| | || | ||||||| | ||| | |
|
|
| T |
31702638 |
atcggattgtccttaagtaataatatcgatgcatcggttaacatatactcgatttctagctcattctcggtaacattatattgagagaagaaactagaat |
31702539 |
T |
|
| Q |
539 |
gagtcatgattcgcattaagcgatagatgcaggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagtt |
638 |
Q |
| |
|
||||||| |||||||| ||||||| ||| || | ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||| || |
|
|
| T |
31702538 |
gagtcattattcgcatcaagcgatgaatgaagcatgtttttgaagggtggattggtagcaaagaaataagttttgagagtgatatgggtttgccataatt |
31702439 |
T |
|
| Q |
639 |
gtgtatgat |
647 |
Q |
| |
|
||||||||| |
|
|
| T |
31702438 |
gtgtatgat |
31702430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 31714463 - 31714243
Alignment:
| Q |
17 |
catcatctggaggaattctctcaaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacatgtggaagatcaaacacagt |
116 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31714463 |
catcagctggaggaattctcttaaacatatctccaccaacatagtttaagttatcacctccttgcaagccatcaacaacatgtggaagatcaaacacagt |
31714364 |
T |
|
| Q |
117 |
gcggtccatttgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaacatttcacca |
216 |
Q |
| |
|
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
31714363 |
gcactctaattgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaacactccacca |
31714264 |
T |
|
| Q |
217 |
cacttctcaatcaccacactt |
237 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31714263 |
cacttctcaatcaccacactt |
31714243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 39 - 644
Target Start/End: Complemental strand, 31734878 - 31734273
Alignment:
| Q |
39 |
aaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacatgtggaagatcaaacacagtgcggtccatttgtgggaatgat |
138 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||| ||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
31734878 |
aaacatgtctccaccaacatagcttagattctcacttccttgcaaaccatcaacaacatgtggtagatcaaacacaatgcactccatttgtgggaatgat |
31734779 |
T |
|
| Q |
139 |
ttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaacatttcaccacacttctcaatcaccacacttg |
238 |
Q |
| |
|
||||||| || ||||||||| |||||||| ||||||||||||||||||||||| || ||| ||||||||| | | |||||||||| || || | | | |
|
|
| T |
31734778 |
ttggcaaaagtctttgccatagtccctgttcctcctccaacatcaaccaatgactcaaattcattgaacactcccttgcacttctcaaccaacaaattgg |
31734679 |
T |
|
| Q |
239 |
tgaccaatcgagcatcactcaccattgcatcattgaataagttgttaaatttaggctcacgcgctgcataatcccatattaacatcccatgtgtagttcc |
338 |
Q |
| |
|
|| ||| |||||||| | |||||| ||||| ||||||||||||||||| | |||| ||| ||||| ||||||| |||||||| ||||| ||| | |
|
|
| T |
31734678 |
aaactaattgagcatcatttgccattgactcattaaataagttgttaaatttggagtcacacgcagcatattcccataacaacatcccgtgtgtcgtttc |
31734579 |
T |
|
| Q |
339 |
aaatgttgaaggatcatcggtttttaaccaactggacatttcatgccacgggtttgccaaaattggatgtagtatggcttgcaaaaatggtgtcacactc |
438 |
Q |
| |
|
||||| || || |||||| |||||||||| | || | || |||||| || || || || ||||| || || || | || ||||||||||||||| |
|
|
| T |
31734578 |
aaatgatgtagtatcatcattttttaaccacatagagaattgatgccaaggattcatcataactggatcgagcatcgcgtacacgaatggtgtcacactc |
31734479 |
T |
|
| Q |
439 |
atggggtgatccttaagcaacagtatagattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcatagaagaagccagatt |
538 |
Q |
| |
|
|| || | ||||||||| || | | ||||| |||| |||| ||||||||| |||||| |||||||| | | || ||| |||| | ||||||||||||| | |
|
|
| T |
31734478 |
attggattatccttaagtaataatctagatgcatcagttaacatatactcaatttctggctcattcgccgcaatattttgttgagagaagaagccagagt |
31734379 |
T |
|
| Q |
539 |
gagtcatgattcgcattaagcgatagatgcaggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagtt |
638 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||| |
|
|
| T |
31734378 |
gagtcatgattcgcatcaagcgatggatgcaaggcttttttgaagggtggattggtagtgaagaaatgagttttgagataggcatgggtttcccatggtt |
31734279 |
T |
|
| Q |
639 |
gtgtat |
644 |
Q |
| |
|
|||||| |
|
|
| T |
31734278 |
gtgtat |
31734273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 31684499 - 31684330
Alignment:
| Q |
39 |
aaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacatgtggaagatcaaacacagtgcggtccatttgtgggaatgat |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
31684499 |
aaacatgtctccaccaacatagtttaagttttcacttcctagcaaaccatcaacaacatgtggaagatcaaatacaatgcactccatttgtgggaatgat |
31684400 |
T |
|
| Q |
139 |
ttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaaca |
208 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| || | | ||||||||| |
|
|
| T |
31684399 |
ttggcaagagtttttgccatggtccctgtacctcctccaacatcaaccaatgactcgacttcattgaaca |
31684330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 31711472 - 31711303
Alignment:
| Q |
39 |
aaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacatgtggaagatcaaacacagtgcggtccatttgtgggaatgat |
138 |
Q |
| |
|
||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
31711472 |
aaacatgtctccaccaacatatcttagcttttcacttccttgcaagccatcaacaacatgtggaagatcaaacacaatgcactccatttgtgggaatgat |
31711373 |
T |
|
| Q |
139 |
ttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatccattgaaca |
208 |
Q |
| |
|
||| |||||| ||||||||||||||| || ||||||||||||||||||||||| || | | ||||||||| |
|
|
| T |
31711372 |
ttgacaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaacttcattgaaca |
31711303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 425 - 647
Target Start/End: Complemental strand, 31711086 - 31710864
Alignment:
| Q |
425 |
atggtgtcacactcatggggtgatccttaagcaacagtatagattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcata |
524 |
Q |
| |
|
|||||| ||||||||| || | ||||| || || ||| ||||| |||| |||| ||||||||| ||||||||||||||| | |||| || | || | | |
|
|
| T |
31711086 |
atggtgccacactcattggattgtccttgagtaatagtttagatgcatcagttaacatatactcaatttctagctcattccctataacgtttttttgaga |
31710987 |
T |
|
| Q |
525 |
gaagaagccagattgagtcatgattcgcattaagcgatagatgcaggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcatg |
624 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||| |||| | ||||||||||||| ||||||||||||||||||||| ||||| ||| |
|
|
| T |
31710986 |
gaagaagccggagtgagtcatgattcgcatcaagcgatgaatgccgtggttttttgaagggtggattgatagtgaagaaatgagttttgagagtggtatg |
31710887 |
T |
|
| Q |
625 |
ggtttgccatagttgtgtatgat |
647 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31710886 |
ggtttgccatagttgtgtatgat |
31710864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 647
Target Start/End: Complemental strand, 31684073 - 31683891
Alignment:
| Q |
465 |
agattcatcggttagcatatactcgatttctagctcattctcagtaacattgtgttcatagaagaagccagattgagtcatgattcgcattaagcgatag |
564 |
Q |
| |
|
|||| |||| |||| ||| ||||| || ||||||||||||||||||| ||| |||| | |||||| |||||| | ||||||||||| || ||||||| | |
|
|
| T |
31684073 |
agatacatcagttaacatgtactcaatctctagctcattctcagtaatattttgttgagagaagatgccagaatacgtcatgattcgtatcaagcgatgg |
31683974 |
T |
|
| Q |
565 |
atgcaggannnnnnngaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtatgat |
647 |
Q |
| |
|
| | || | | ||||| |||||| |||||| |||||||||||| |||| ||| ||| | ||||| ||||||||||| |
|
|
| T |
31683973 |
aagtagcaagtttttgtagggttgattggaagtgaactaatgagttttgagagtgacataggtctaccataattgtgtatgat |
31683891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 36 - 200
Target Start/End: Complemental strand, 30570461 - 30570297
Alignment:
| Q |
36 |
ctcaaacatgtctccaccaacatagtttaagttatcaactccttgcaagccatcaacaacatgtggaagatcaaacacagtgcggtccatttgtgggaat |
135 |
Q |
| |
|
|||||||||||| || |||||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||| ||| ||| || || | ||||||| |
|
|
| T |
30570461 |
ctcaaacatgtcacctccaacatattttaagttttcacttccttgtaagccatcaacaacatgtggaagatcaaatacaatgcactcaatgtttgggaat |
30570362 |
T |
|
| Q |
136 |
gatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaatcc |
200 |
Q |
| |
|
|| || |||| |||| | || |||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
30570361 |
gacttagcaatgaccttagtaatagtccctatgcctccaccaacatcaaccaatgattccaatcc |
30570297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 644
Target Start/End: Complemental strand, 30569923 - 30569859
Alignment:
| Q |
580 |
gaagggtggattggtagtgaagaaatgagttttgaaagtggcatgggtttgccatagttgtgtat |
644 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
30569923 |
gaagggtggattggtaacaaagaaatgagttttgagagtgggattggttggccatagttgtgtat |
30569859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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