View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18425_low_6 (Length: 500)
Name: NF18425_low_6
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_low_6 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 44285878 - 44285603
Alignment:
| Q |
1 |
actcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctgacttctctattga |
100 |
Q |
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| T |
44285878 |
actcaatccatctctgttgctgcttcccggtaacattgatcaatcaatttacgg-cggaatcttcctttaagtcaatcgagtgcctgacttctctattga |
44285780 |
T |
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| Q |
101 |
tctgaccggctcgattgagacagagagtaaaggtgcgaatcggctaaaaggctgagtccgagactgggagaagaactagcaagaaatgcagacttcgctc |
200 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || || |||| |
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| T |
44285779 |
tctgaccgaattgattgagacagagagtaaaggtgcgaatcggctaaaaggtcgagtccgagattgggagaagaactagcaagaaatgccgaatttgctc |
44285680 |
T |
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| Q |
201 |
cgcacctttaggtaaagatccccattgtccaatcttcctttaatggatatattcttaaatgtaacttccggtaagaa |
277 |
Q |
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|||| | |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44285679 |
cgcatcgttaggtaaagatccccattggccaatcttcctttaatggatatattcttcaatgtaacttccggtaagaa |
44285603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 44070135 - 44070410
Alignment:
| Q |
1 |
actcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctgacttctctattga |
100 |
Q |
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||||||||||||||||||||||||||| || ||||| ||||| |||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
44070135 |
actcaatctgtctctgttgctgcttcctggcaacatcaatcaatcaattaacgg-cggaaccttcctttaagtcaatcaagtgcctgacttctctattga |
44070233 |
T |
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| Q |
101 |
tctgaccggctcgattgagacagagagtaaaggtgcgaatcggctaaaaggctgagtccgagactgggagaagaactagcaagaaatgcagacttcgctc |
200 |
Q |
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| T |
44070234 |
tctgaccggctagattgagacagagagtaaaggtgcaaaccggctaaacggctgagtccgagattgggagaagaactagcaagaaatgccgaattcgctc |
44070333 |
T |
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| Q |
201 |
cgcacctttaggtaaagatccccattgtccaatcttcctttaatggatatattcttaaatgtaacttccggtaagaa |
277 |
Q |
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| T |
44070334 |
cgcattgtaaggtaaagatctccattgtccaatcttgctttaatggatatattcttcaatgtaacttctggtaagaa |
44070410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 323 - 488
Target Start/End: Original strand, 49237921 - 49238086
Alignment:
| Q |
323 |
cagactgcctctttctagatagattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgc |
422 |
Q |
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| T |
49237921 |
cagactgcctatttctagatagattctatggatgatgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccaatgcatgtcgtac |
49238020 |
T |
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| Q |
423 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
488 |
Q |
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| T |
49238021 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
49238086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 343 - 488
Target Start/End: Complemental strand, 6329 - 6184
Alignment:
| Q |
343 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
442 |
Q |
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| T |
6329 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
6230 |
T |
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| Q |
443 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
488 |
Q |
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| T |
6229 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
6184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 16443758 - 16443843
Alignment:
| Q |
1 |
actcaatctgtctctgttgctgcttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctg |
87 |
Q |
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| T |
16443758 |
actcaatctgtctctgttgctgcttcctggcaacatcaatcaatcaattaac-ggcggaaccttcctttaagtcaatcaagtgcctg |
16443843 |
T |
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