View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18425_low_7 (Length: 493)
Name: NF18425_low_7
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 73 - 493
Target Start/End: Original strand, 41153808 - 41154228
Alignment:
| Q |
73 |
gcgtattttggggattaaaaaagtttttggtggtacatttaacaattttcataaactatctatatcgttttagaatggactgggtccataatcaacgacc |
172 |
Q |
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| T |
41153808 |
gcgtattttggggattaaaaaagtttttggtggtacatttaacaattttcataaactatctatatcgttttagaatggactgggtccataatcaacgacc |
41153907 |
T |
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| Q |
173 |
cgacccgtttaataagtgtgacatatagtcccgaaaaccctaatttgccactgtctgcttccatcacacaagcttcacgcagatttcacatcttagggtt |
272 |
Q |
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| T |
41153908 |
cgacccgtttgataagtgtgacatatagtcccgaaaaccctaatttgccactgtctgcttccatcacacaagcttcacgcagatttcacatcttagggtt |
41154007 |
T |
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| Q |
273 |
tcttcatattcgccgattcaatggctccaccaaaaggtatttatctatccctcttttcttttcaatagtcgaagatttgatttcactctctaattattcc |
372 |
Q |
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| T |
41154008 |
tcttcatcttcaccgatttaatggctccaccaaaaggtatttatctatccctcttttcttttcaatagtcgaagatttgattttactctctaattattcc |
41154107 |
T |
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| Q |
373 |
gatttctgcatctgttttcataatgtaattgcttaagtacaaaaatcactgctttcacgagtttctggattaaatattggtttatctgcactgttgattt |
472 |
Q |
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| T |
41154108 |
gatttctgcatctgttttcataatgtaattgcttaagtacgaaaatcactgctttcacgagtttctggattaaatattggtttatctgcactgttgattt |
41154207 |
T |
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| Q |
473 |
taataatctgtgtttttgtgc |
493 |
Q |
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| T |
41154208 |
taataatctgtgtttttgtgc |
41154228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 99 - 355
Target Start/End: Original strand, 150818 - 151057
Alignment:
| Q |
99 |
ttggtggtacatttaacaattttcataaactatctatatcgttttagaatggactgggtccataatcaacgacccgacccgtttaataagtgtgacatat |
198 |
Q |
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| T |
150818 |
ttggtggtacatttaacaattttcatatactatttatttggtttaa-aatggactaggcccataatcaacaacccaacccgtttgataaacg----atct |
150912 |
T |
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| Q |
199 |
agtcccgaaaaccctaatttgccactgtctgcttccatcacacaagcttcacgcagatttcacatcttagggtttcttcatattcgccgattcaatggct |
298 |
Q |
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| T |
150913 |
a------aaaaccctaatttgccactgtctgcttcca-cacaca----tcacgcatatttcacatct-agggtttcta-atcttcgccgattcaacggct |
150999 |
T |
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| Q |
299 |
ccaccaaaaggtattt-atctatccctcttttcttttcaatagtcgaagatttgattt |
355 |
Q |
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| T |
151000 |
ccgccgaaaggtatttcatctatccctcttttcttttcaatagtcgaaaatttgattt |
151057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 99 - 355
Target Start/End: Complemental strand, 153612 - 153373
Alignment:
| Q |
99 |
ttggtggtacatttaacaattttcataaactatctatatcgttttagaatggactgggtccataatcaacgacccgacccgtttaataagtgtgacatat |
198 |
Q |
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| T |
153612 |
ttggtggtacatttaacaattttcatatactatttatttggtttaa-aatggactaggcccataatcaacaacccaacccgtttgataaacg----atct |
153518 |
T |
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| Q |
199 |
agtcccgaaaaccctaatttgccactgtctgcttccatcacacaagcttcacgcagatttcacatcttagggtttcttcatattcgccgattcaatggct |
298 |
Q |
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| T |
153517 |
a------aaaaccctaatttgccactgtctgcttcca-cacaca----tcacgcatatttcacatct-agggtttcta-atcttcgccgattcaacggct |
153431 |
T |
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| Q |
299 |
ccaccaaaaggtattt-atctatccctcttttcttttcaatagtcgaagatttgattt |
355 |
Q |
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| T |
153430 |
ccgccgaaaggtatttcatctatccctcttttcttttcaatagtcgaaaatttgattt |
153373 |
T |
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