View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18425_low_8 (Length: 481)

Name: NF18425_low_8
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18425_low_8
NF18425_low_8
[»] chr2 (5 HSPs)
chr2 (20-481)||(44109771-44110230)
chr2 (20-299)||(40276680-40276975)
chr2 (20-317)||(40450314-40450613)
chr2 (371-412)||(40450213-40450254)
chr2 (371-412)||(40507017-40507058)


Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Original strand, 44109771 - 44110230
Alignment:
Q  20 ggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgcttaatctgcctcatttaaatgttaaaacagtga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44109771 ggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgcttaatctgcctcatttaaatgttaaaacagtga 44109870  T
Q  120 tattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaattccagtgccttattgtt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44109871 tattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaattccagggccttattgtt 44109970  T
Q  220 tcaaatcttctctcaagatgcttcagatttcagactttcatggatattatagttcaatcagtttcgttgagtttattttacaaaatgcaagagttttaaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44109971 tcaaatcttctctcaagatgcttcagatttcagactttcatggatattatagttcaatcagtttcgttgagtttattttacaaaatgcaagagttttaaa 44110070  T
Q  320 gcagatcgagattacctgttcgccatttttaccacatggtgtgcctttgaagaacctggcggatgtcaagaatcaacttgcagacatgagaagatgagac 419  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44110071 gctgatcgagattacctgttcgccatttttaccacatggtgtgcctttgaagaacctggcggatgtcaagaatcaacttgcagacatgagaagatgagac 44110170  T
Q  420 attcagtttaagtaaatannnnnnnnnagtaggaattgaattttcttgtctaactttaataa 481  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  44110171 attcagtttaagtaaata--tttttttagtaggaattgaattttcttgtctaactttaataa 44110230  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 40276680 - 40276975
Alignment:
Q  20 ggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgcctta----tatcctgcttaatctgcctcatttaaatgttaaaaca 115  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||| ||||| |||||    |||||||||||||||| ||||||| | ||||||||||    
T  40276680 ggaattcctcttaaggtgtcctaaattggaagctcttgtttttcctcaggtacaccttaattatatcctgcttaatctgtctcatttcattgttaaaaca 40276779  T
Q  116 gtgatatt-acttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaattccagtgcctta 214  Q
     ||||||| |||||||||| |||||||||||||||||||  |||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||||    
T  40276780 atgatatttacttctatccactaacttgttaattgattccaatttagggaattggcaaactcgtggataagagaaactatgcataaattccagtgcctta 40276879  T
Q  215 ttgtttcaaa--tcttctctcaagatgcttcagatttcagactttcatggatat---------tatagttcaatcagtttcgttgagtttatttta 299  Q
    ||||||||||  |||||||||||||| ||||| |||||| | ||||||||||||         |||||||||||||||||| |||||||| |||||    
T  40276880 ttgtttcaaatttcttctctcaagatacttcacatttcaaattttcatggatattctattatatatagttcaatcagtttcattgagtttctttta 40276975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 40450613 - 40450314
Alignment:
Q  20 ggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgct--taatctgcctcatttaaatgttaaaacagt 117  Q
    |||||| ||| |||||||||||||||||||| | |||||| | |||||||||| ||||||||||| ||  |||||| || |||||  | |||||| || |    
T  40450613 ggaatttctcctaaggtgtcctaaactggaagcacttgttttacctctggtacaccttatatccttcttataatctcccccatttctaggttaaatcaat 40450514  T
Q  118 gatattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaattccagtgccttattg 217  Q
    ||||||| ||| ||||  | ||||||||||||||||||||||||| | ||  |||| || | |||| ||  ||||   |||||||||||||||||| |||    
T  40450513 gatattatttccatccattgacttgttaattgattcttatttaggcagttaccaaattcttggatatgaatgactcgacattaattccagtgccttgttg 40450414  T
Q  218 tttcaaatcttctctcaagatgcttcagatttcagactttcatggatattatagttcaatcagtttcgttgagtttattttacaaaatgcaagagtttta 317  Q
    ||||||||||||||||||||||||||| |||||| | | | |||||| | || ||  ||||   ||| |||||||| ||||| ||||||||||| |||||    
T  40450413 tttcaaatcttctctcaagatgcttcacatttcaaaatatgatggatctgatcgtggaatccaattcattgagtttgttttaaaaaatgcaagactttta 40450314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 40450254 - 40450213
Alignment:
Q  371 gaacctggcggatgtcaagaatcaacttgcagacatgagaag 412  Q
    ||||||||||||||||||||| |||||||||| |||| ||||    
T  40450254 gaacctggcggatgtcaagaaccaacttgcaggcatgggaag 40450213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 40507058 - 40507017
Alignment:
Q  371 gaacctggcggatgtcaagaatcaacttgcagacatgagaag 412  Q
    ||||||||||||||||||||| |||||||||| |||| ||||    
T  40507058 gaacctggcggatgtcaagaaccaacttgcaggcatgggaag 40507017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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