View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18425_low_9 (Length: 471)
Name: NF18425_low_9
Description: NF18425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18425_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 152 - 359
Target Start/End: Original strand, 41986750 - 41986949
Alignment:
| Q |
152 |
tgctgcctacataatcctccagcagaatcataacaatgtggtcctatatatgtatatgattaaatggaagccgtgcatatgcatgtgtaacttgctgcca |
251 |
Q |
| |
|
||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41986750 |
tgctgcctacatagtcctcctgcggaatcataacaatgtggtcctat----gtatatgattaaatggaagccgtgcatatg----tgtaacttgctgcca |
41986841 |
T |
|
| Q |
252 |
atgttttctcaaggatatacactgttgagcatactgagttatacttggattcagtttttgttatgtaaaagtgagtagcagtgggggacagtaaagatta |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41986842 |
atgttttctcaaggatatacactgttgagcatactgagttctacttggattcagtttttgttatgtaaaagtgagtagcagtgggggacagtaaagatta |
41986941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 41978474 - 41978616
Alignment:
| Q |
8 |
tgaaatgaacataaaccctctttgaataggcctgcataaatgataatctgaaatgtgaaactacaaaagttaatgattcaaaagagaaagtcatgcctat |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41978474 |
tgaactgaacataaaccctctttgaataggccggcatgaatgataatctgaaatgtgaaactacaaaagttaatgattcaaaagagaaagtcatgcctat |
41978573 |
T |
|
| Q |
108 |
tcttataactgaaataatagcaagataaacatgatttcgacac |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41978574 |
tcttataactgaaataatagcaagataaacatgacttcgacac |
41978616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 41986963 - 41987002
Alignment:
| Q |
356 |
ctatatatgaatgtttattgttatgagcaaagtttgctccc |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41986963 |
ctatatatgaatgtttattgttatgagcaaa-tttgctccc |
41987002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 452
Target Start/End: Original strand, 41987108 - 41987143
Alignment:
| Q |
417 |
cattttattactattccatattattaatgactaccc |
452 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41987108 |
cattttattactattcgatattattaatgactaccc |
41987143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 243 - 452
Target Start/End: Complemental strand, 1221604 - 1221380
Alignment:
| Q |
243 |
ttgctgccaatgttttctcaaggatatacactgttgagcatactgagttatacttggattcagtttttgttatgtaaaagtgagtagcagtgggggacag |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1221604 |
ttgctgccaatgttttctcaaggatatacactgttgagcatactgagttatacttggattcagtttttgttatgtaaaagtgagtagcagtgggggacag |
1221505 |
T |
|
| Q |
343 |
taaagattacaga-----------------ctatatatgaatgtttattgttatgagcaaagtttgctcccnnnnnnnnnngtctatttggcattttatt |
425 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1221504 |
taaagattacagactattttttgcatgtatctatatatgaatgtttattgttatgagcaaagtttgctccc--ttttttttgtctatttggcattttatt |
1221407 |
T |
|
| Q |
426 |
actattccatattattaatgactaccc |
452 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
1221406 |
actattcgatattattaatgactaccc |
1221380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University