View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18426_high_1 (Length: 974)
Name: NF18426_high_1
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 820; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 42 - 961
Target Start/End: Original strand, 33646901 - 33647820
Alignment:
| Q |
42 |
agaaacattgttgcaaatttagcagaatctgtctcttgttatttccctatctgatccctttctgtttattgttgattaaactgaaatcttttaaagaaag |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33646901 |
agaaacattgttgcaaatttagcagaatctgtctcttgttatttccctatctgatccctttctgtttattgttgattaaactgaaatcttttaaagaaag |
33647000 |
T |
|
| Q |
142 |
ttttctatgctttaaatatgtagaaatctctctggtttagtatcatattaaaacacattttctcttttgaatttgcagattctgtattgtaataatagag |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33647001 |
ttttctatgctttaaatatgtagaaatctctctggtttagtatcatattaaaacacattttctcttttgattttgcagattctgtattgtaataatagag |
33647100 |
T |
|
| Q |
242 |
aagaagataaactaagagtgataaaacaaaagtcatgtgcaacggctcgaatagaaaaccttgtcaaactggtttgattagggagaatgaatgtgaaaga |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
33647101 |
aagaagataaactaagagtgataaaacaaaagtcatgtgcaacggttcgaatagaaaaccttgtcaaactggtttgataagggaaaatgaatgtgaaaga |
33647200 |
T |
|
| Q |
342 |
caagaagaacttcatcataagatttcacctttgcttgagttttcagccaaagatgatgtaatggcgttcacagctgctgttgaaaaagatgatcatgatg |
441 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||| |
|
|
| T |
33647201 |
caagaagaacatcatcataagatttcagctttgcttgagttttcagccaaagatgatgtaatggcgttcacagatgcagttgagaaagatgatcataatg |
33647300 |
T |
|
| Q |
442 |
ttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacacctcttatggtaggtgctttatatggaagcaa |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33647301 |
ttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacacctcttatggtagctgctttatatggaagcaa |
33647400 |
T |
|
| Q |
542 |
gggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtttctggttgt |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33647401 |
gggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtgtggctcagatagggctaccgctcttcgttgtgctgtttctggttgt |
33647500 |
T |
|
| Q |
642 |
tctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgacttggttgtct |
741 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
33647501 |
tctgctgcttctgccgaggttgtcaaacttctgcttgatgcatctgcagatgttagttccgctgatgcatatcgtaaccggtgcagcaacttggttgtct |
33647600 |
T |
|
| Q |
742 |
cggtttctaatagtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatgttgatgacgaggacgacgatttccttaagga |
841 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33647601 |
cggtttctaatagtctctacggttcaaggaagaggatactacaagggatactagaaggggtagatgatgttgatgacgaggacgacaatttccttaagga |
33647700 |
T |
|
| Q |
842 |
aataggtttccaaatggtggagaagcaacaagacgtaggtacacctcgcaccgagaagaaagatcatcccattgatccatccctacctgacataaaaaat |
941 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33647701 |
aataggtttccaaatggtggagaagcaacaagacgtaggtacacctcacaccgagaagaaagattatcccattgatccatccctacctgacataaagaat |
33647800 |
T |
|
| Q |
942 |
ggaatatatagtacagatga |
961 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33647801 |
ggaatatatagtacagatga |
33647820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 55 - 961
Target Start/End: Original strand, 25811743 - 25812623
Alignment:
| Q |
55 |
caaatttagcagaatctgtctcttgttatttccctatctgatccctttctgtttattgttga-ttaaactgaaatcttttaaagaaagttttctatgctt |
153 |
Q |
| |
|
||||||||||||||| |||||| | ||| || |||||| ||| | |||||||||||||| | |||||||||||| |||||| | || |||||||||||| |
|
|
| T |
25811743 |
caaatttagcagaatttgtctccttttaattgcctatcagattc--ttctgtttattgtttaattaaactgaaattttttaagggaa-ttttctatgctt |
25811839 |
T |
|
| Q |
154 |
taaatatgtagaaatctctctggtttagtatcatattaaaacacattttctcttttgaatttgcagattctgtattgtaataatagagaagaagataaac |
253 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||||||||||| || ||||||||||||| |||||||||||||||| || | | ||| ||||| |
|
|
| T |
25811840 |
taaatatgtagaattctctcttgtttagcatcatattaaaaaacgttttctcttttgattttgcagattctgtata--------agggga-aagctaaac |
25811930 |
T |
|
| Q |
254 |
taagagtgataaaacaaaa-gtcatgtgcaacggctcgaatagaaaaccttgtcaaactggtttgattagggagaatgaatgtgaaagacaagaagaact |
352 |
Q |
| |
|
|| || |||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||| ||||||| |
|
|
| T |
25811931 |
aaactgtaataaaataaaaagtcatgttcaacggtgcgaatagaaaaccttgtcaaactggtttgattaaggaaaatgaatatggaagacaataagaact |
25812030 |
T |
|
| Q |
353 |
tcatcataagatttcacctttgcttgagttttcagccaaagatgatgtaatggcgttcacagctgctgttgaaaaagatgatcatgatgttgatgaagta |
452 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||| || ||||| || ||||| ||| |
|
|
| T |
25812031 |
tcatcataagatttcggctttgcttgagttttcagccaaagatgacgtattggcattcacagatgctgttgaaaaaggcgaacatgaagtcgatgaggta |
25812130 |
T |
|
| Q |
453 |
gggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacacctcttatggtaggtgctttatatggaagcaagggtgtgttgt |
552 |
Q |
| |
|
|| |||||||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||||| | ||| |||| |||||||||||||||||||| |
|
|
| T |
25812131 |
ggattatggtatggaagaagggttggatcgaaggatatgggatatgaagagaggacggctcttatggttgctgccttatttggaagcaagggtgtgttgt |
25812230 |
T |
|
| Q |
553 |
cttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtttctggttgttctgctgcttc |
652 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
25812231 |
cttatattctcggaaccagtcgtgttgatgtcaaccgagtgtgcggctcagatagggctaccgctcttcgttgtgctgtttctggatgttctgctgcttc |
25812330 |
T |
|
| Q |
653 |
tgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgacttggttgtctcggtttctaat |
752 |
Q |
| |
|
||| || ||| |||| |||| |||||||| ||||||||||||||||||| ||||| || | ||| | ||||||||||||| |||||||||| |||| | |
|
|
| T |
25812331 |
tgctgaagttatcaacctttcgcttgatgcatctgcagatgttagttccattgatgtgaatgataa-cagtgcagcgacttgattgtctcggtgtctagt |
25812429 |
T |
|
| Q |
753 |
agtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatgttgatgacgaggacgacgatttccttaaggaaataggtttcc |
852 |
Q |
| |
|
||| | | ||||||||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||| ||| ||||||| | |
|
|
| T |
25812430 |
agtatattcggttcaaggaagaggatactacgatccatactagaaggcgtagatgatgtt---------------gatttccttaaagaagtaggttttc |
25812514 |
T |
|
| Q |
853 |
aaatggtggagaagcaacaagacgtaggtacacctcgcaccgagaagaaagatcatcccattgatccatccctacctgacataaaaaatggaatatatag |
952 |
Q |
| |
|
|| |||||||| |||| ||| | |||| ||||||||| || |||||||||||| |||| ||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
25812515 |
aattggtggagcagcagcaaaatgtagctacacctcgaactgagaagaaagattatccaattaatccatccctacctgacataaacaatgagatatatag |
25812614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 82 - 396
Target Start/End: Original strand, 25817487 - 25817792
Alignment:
| Q |
82 |
atttccctatctgatccctttctgtttattgttgattaaactgaaatcttttaaagaaagttttctatgctttaaatatgtagaaatctctctggtttag |
181 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| |||||||||||||||||| || | |||||||||||| | ||||||| || |||||||||||| | |
|
|
| T |
25817487 |
atttccctatctgattcctttcagtttattgttgaataaactgaaatcttttaa-gagaattttctatgctt-atatatgtaaaattctctctggtttgg |
25817584 |
T |
|
| Q |
182 |
tatcatattaaaacacattttctcttttgaatttgcagattctgtattgtaataatagagaagaagataaactaagagtgataaaacaaaagtcatgtgc |
281 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||| ||||| ||| || | |||||||| ||||||||||| |
|
|
| T |
25817585 |
tatcatattaaaacacgttttctcttttgattttgcaaattctgta---taataatagagaggaagacaaa-aaaaactgataaaatcaaagtcatgtgt |
25817680 |
T |
|
| Q |
282 |
aacggctcgaatagaaaaccttgtcaaactggtttgattagggagaatgaatgtgaaagacaagaagaacttcatcataagatttcacctttgcttgagt |
381 |
Q |
| |
|
||| | ||||| ||||||||||||||| | ||||||||||||| ||||||| || || || ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25817681 |
aacagtgcgaatggaaaaccttgtcaaattagtttgattagggaaaatgaatatggaacac---aagaacttcatcataagatttcagctttgcttgagt |
25817777 |
T |
|
| Q |
382 |
tttcagccaaagatg |
396 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25817778 |
tttcagccaaagatg |
25817792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 438 - 766
Target Start/End: Original strand, 25817789 - 25818117
Alignment:
| Q |
438 |
gatgttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacacctcttatggtaggtgctttatatggaa |
537 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||||||||||||||| | |||||||| ||||| ||||||||| | | ||| || | ||||| |
|
|
| T |
25817789 |
gatgttgatgaagtaggattgtggtatggaaggaagattggatcaaaggaaatgagttatgaagaaaggacccctcttatgattgctgccttgtttggaa |
25817888 |
T |
|
| Q |
538 |
gcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtttctgg |
637 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||| |||| | ||| ||||| |||| ||| |||||||||| | ||||| |||| |
|
|
| T |
25817889 |
gcaagggtgtgttgtcttatattcttggaaccggtcgtgtcaatgttagccgaccttgtggttcagacaggggtacagctcttcatttttctgttactgg |
25817988 |
T |
|
| Q |
638 |
ttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgacttggtt |
737 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||| |||||| |||||||||| |||| | ||||| || | ||| |||| | ||||||| || |
|
|
| T |
25817989 |
ttgttctgctgcttctgccgagattattaagcttttggttgatgcttctgcagatggtagtgttgttgatgagaatgacaactggtgtaacgacttgatt |
25818088 |
T |
|
| Q |
738 |
gtctcggtttctaatagtctctacggttc |
766 |
Q |
| |
|
|||||||| ||||||||| ||| |||||| |
|
|
| T |
25818089 |
gtctcggtgtctaatagtatctccggttc |
25818117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 832 - 961
Target Start/End: Original strand, 25818160 - 25818288
Alignment:
| Q |
832 |
tccttaaggaaataggtttccaaatggtggagaagcaacaagacgtaggtacacctcgcaccgagaagaaagatcatcccattgatccatccctacctga |
931 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||||||||| ||| |||||||||| || |||||||||||| |||| |||||||||||| |||||| |
|
|
| T |
25818160 |
tccttaaggaagcaggtttccaaatg-tggagcagcaacaagatgtatgtacacctcgaactgagaagaaagattatccaattgatccatccatacctgg |
25818258 |
T |
|
| Q |
932 |
cataaaaaatggaatatatagtacagatga |
961 |
Q |
| |
|
||||||||||| |||||||| |||||||| |
|
|
| T |
25818259 |
cataaaaaatgagatatatagcacagatga |
25818288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 437 - 717
Target Start/End: Original strand, 30121727 - 30122007
Alignment:
| Q |
437 |
tgatgttgatgaagtagggttatggtatggaaggaaggttggatcaaaggaaatgggatatgaagagaggacacctcttatggtaggtgctttatatgga |
536 |
Q |
| |
|
||||||||||| || || || |||||||||||||| ||||| ||||| || | || |||||||||||||||||||| ||||| | |||| | |||||| |
|
|
| T |
30121727 |
tgatgttgatggggttggtttgtggtatggaaggaacgttggttcaaacaaatttggttatgaagagaggacacctctcatggttgctgctatgtatgga |
30121826 |
T |
|
| Q |
537 |
agcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgta-tggctcagatagggctaccgctcttcattgtgctgtttct |
635 |
Q |
| |
|
|| || ||| | | |||||||||| ||||| ||||| ||||||||||| || || || ||| || ||| | ||||| |||||||||||||| ||| | |
|
|
| T |
30121827 |
agtttggatgtatcggcttatattcttggaacaggtcgggttgatgttaatcg-gtctagtggatccgatggtgctactgctcttcattgtgcggttgtt |
30121925 |
T |
|
| Q |
636 |
ggttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggta |
717 |
Q |
| |
|
|| ||||||||||||| || || || ||||| |||||||||||| ||| || |||| |||| | | |||||| ||||||| |
|
|
| T |
30121926 |
gggggttctgctgcttcccccaagattatcaagattttgcttgatgcatcggcggatgctagtgctgttgatgccaacggta |
30122007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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