View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18426_high_12 (Length: 319)
Name: NF18426_high_12
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 33386320 - 33386610
Alignment:
| Q |
15 |
aaaaaggatgccatatgatatttgcgtcaagaagaaacctccatctccactaagaattagagagatagggtggtattccgataaggattgtggattattc |
114 |
Q |
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| T |
33386320 |
aaaaaggatgccatatgatatttgtgtcaagaagaaacctccatctccactaagaattagagagatagggtggtattccgataaggactgtggattattc |
33386419 |
T |
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| Q |
115 |
ttcttagggattaatgcaataaaggatgatgttagagcctttggtagttttgcgttgaagtaaaattcatgcataaataattgtagaatttcttctttca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33386420 |
ttcttagggattaatgcaataaaggatgatgttagagcctttggtagttttgcgttgaagtaaaattcatgcataaataattgtagaatttcttctttca |
33386519 |
T |
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| Q |
215 |
acaagtcccaactcgcctttagaaagcaaaccttgtaatcatcccgggtcccagacttttattcttgccacacattcatatagcttctttg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33386520 |
acaagtcccaactcgcctttagaaagcaaaccttgtaatcatccccggtcccagacttttattcttgccacacattcatatagcttctttg |
33386610 |
T |
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