View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18426_high_3 (Length: 636)

Name: NF18426_high_3
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18426_high_3
NF18426_high_3
[»] chr5 (6 HSPs)
chr5 (186-509)||(38595952-38596275)
chr5 (1-172)||(38596313-38596484)
chr5 (1-172)||(38552329-38552500)
chr5 (1-168)||(38060866-38061034)
chr5 (189-328)||(38060683-38060826)
chr5 (573-624)||(38595837-38595888)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 186 - 509
Target Start/End: Complemental strand, 38596275 - 38595952
Alignment:
Q  186 tcggttacttgttattgttaattaacataaattttatagatagcaccccagtttattttatcatttagaatactgctttaaaaatttacttatggtgtgc 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38596275 tcggttacttgttattgttaattaacataaattttatagatagcaccccaatttattttatcatttagaatactgctttaaaaatttacttatggtgtgc 38596176  T
Q  286 atccaacaagattacgttggatcaagtgaaacatagttaagtgcaatattagttctttccttcttttttatttgatctattttggtccactacatttccc 385  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38596175 agccaacaagattacgttggatcaagtgaaacatagttaagtgcaatattagttcttttcttcttttttatttgatctattttggtccactacatttccc 38596076  T
Q  386 ccttttaattcagtagccctattataattttccctcaaattatgctattaaaacacaattaatcgacgctaaagaaatgaaataaaccttggcagaatac 485  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38596075 ccttttaattcagtagtcctattataattttccctcaaattatgctaagaaaacacaattaatcgacgctaaagaaatgaaataaaccttggcagaatac 38595976  T
Q  486 aatcatatcaagaccgtccatata 509  Q
    ||||||||||||||||||||||||    
T  38595975 aatcatatcaagaccgtccatata 38595952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 38596484 - 38596313
Alignment:
Q  1 cacactatgatgacccaaatatattgcagttcaagccataattcttccatcacaaacaaatattgttgttataggtgaagactatatagtattgggtcga 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38596484 cacactatgatgacccaaatatgttgcagttcaagccataattcttccatcacaaacaaatattgttgttataggtgaagactatatagtattgggtcga 38596385  T
Q  101 aatacgaagctccaaatgagtgtttgtatgactgaaacataactataaaacctatcgttgcatgcatgcatg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38596384 aatacgaagctccaaatgagtgtttgtatgactgaaacataactataaaacctatcgttgcatgcatgcatg 38596313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 38552329 - 38552500
Alignment:
Q  1 cacactatgatgacccaaatatattgcagttcaagccataattcttccatcacaaacaaatattgttgttataggtgaagactatatagtattgggtcga 100  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38552329 cacactatgatgacctaaatatgttgcagttcaagccataattcttcaatcacaaacaaatattgttgttatagatgaagactatatagtattgggtcga 38552428  T
Q  101 aatacgaagctccaaatgagtgtttgtatgactgaaacataactataaaacctatcgttgcatgcatgcatg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38552429 aatacgaagctccaaatgagtgtttgtatgactgaaacataactataaaacctatcgttgcatgcatgcatg 38552500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 38061034 - 38060866
Alignment:
Q  1 cacactatgatgacccaaatatattgcagttcaagccataattcttccatcacaaacaaatattgttgttataggtgaagactatatagtattgggtcga 100  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38061034 cacactatgatgacccaaatatgttgcagttgaagccataattcttccatcacaaacaaatattgttgttataggtgaagactatatagtattgggtcga 38060935  T
Q  101 aatacgaagctccaaatgagtgtttgtatgactgaaacataactat-aaaacctatcgttgcatgcatg 168  Q
    |||||||||||||||||||||||||||||| || ||||| |||||| |||||||||| |||||||||||    
T  38060934 aatacgaagctccaaatgagtgtttgtatggctaaaacacaactataaaaacctatctttgcatgcatg 38060866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 38060826 - 38060683
Alignment:
Q  189 gttacttgttattgttaattaacataaattttatagatagcaccccagtttattttat--catttagaatactgctttaaaaatttacttatggtgtgca 286  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| |||||| |||  |||| ||| |||||||||| ||||||||||||||||||||    
T  38060826 gttacttgttattgttaattaacataaatttta--gatagcaccccactttattatatatcattcagagtactgctttacaaatttacttatggtgtgca 38060729  T
Q  287 ----tccaacaagattacgttggatcaagtgaaacatagttaagtg 328  Q
        |||||| |||||||||||||||||||||||||||| ||||||    
T  38060728 gagatccaactagattacgttggatcaagtgaaacatagctaagtg 38060683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 573 - 624
Target Start/End: Complemental strand, 38595888 - 38595837
Alignment:
Q  573 tatgccgcacttatacaagtaattcgcaaacaaaaacagatcctaatatgtg 624  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38595888 tatgccgcacttatacaaggaattcgcaaacaaaaacagatcctaatatgtg 38595837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University