View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18426_high_6 (Length: 444)
Name: NF18426_high_6
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 25746211 - 25745796
Alignment:
| Q |
18 |
tatggaaatagttttgaatctttcttggtggcagttgtgatccctgaaagacaggcccttgaggattgggcagcgaagcatgaattgtctgatgatttta |
117 |
Q |
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| T |
25746211 |
tatggaaatagttttgaatctttcttggtggcagttgtgatccctgaaagacaggcccttgaggattgggcagcgaagcatgaattgtctgatgatttta |
25746112 |
T |
|
| Q |
118 |
aatctttatgtggaaatccaaaggcaagaaaatatattttggatgagctcaacatcactggtcagaaacatcaagtatgtaaatacaatgtccaccatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25746111 |
aatctttatgtggaaatccaaaggcaagaaaatatattttggatgagctcaacatcactggtcagaaacatcaagtatgtaaatacaatgtccaccatgt |
25746012 |
T |
|
| Q |
218 |
gcttaatttctgatgttatgctacctttttatcttagtgattacatttgacatgattgattttctcagcttagaggttttgagctggtaaaagcagttca |
317 |
Q |
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| T |
25746011 |
gcttaatttctgatgttatgctacctttttatcttagtgattacatttgacatgattgattttctcagcttagaggttttgagctggtaaaagcagttca |
25745912 |
T |
|
| Q |
318 |
tctggaaccaattccctttgatgtggagagagatctaataactccaacattcaaattgaagagaccacagttgctaaagcactataaggtttgtccctta |
417 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745911 |
tctggaaccagttccctttgatgtggagagagatctaataactccaacattcaaattgaagagaccacagttgctaaagcactataaggtttgtccctta |
25745812 |
T |
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| Q |
418 |
ttctctggtcagtatt |
433 |
Q |
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||||||||||| |||| |
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| T |
25745811 |
ttctctggtcaatatt |
25745796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 12516056 - 12515875
Alignment:
| Q |
17 |
atatggaaatagttttgaatctttcttggtggcagttgtgatccctgaaagacaggcccttgaggattgggcagcgaagcatgaattgtctgatgatttt |
116 |
Q |
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||||||||| ||||| || || ||||||||||| || ||| ||||||||||| |||| |||||||||||||||| |||| | || | | ||| ||| |
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| T |
12516056 |
atatggaaacagtttcgagtcgttcttggtggctgtggtggtccctgaaagaaaggctcttgaggattgggcagttgagcacaattttacaggtgacttt |
12515957 |
T |
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| Q |
117 |
aaatctttatgtggaaatccaaaggcaagaaaatatattttggatgagctcaacatcactggtcagaaacatcaagtatgta |
198 |
Q |
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||||| |||||| ||||| |||||||||| |||| ||||||||||| ||||| | |||||||||||||| |||||||||| |
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| T |
12515956 |
caatctgtatgtgaaaatctaaaggcaagacaatacattttggatgaactcaaaagcactggtcagaaactccaagtatgta |
12515875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 386
Target Start/End: Complemental strand, 12515780 - 12515674
Alignment:
| Q |
280 |
tctcagcttagaggttttgagctggtaaaagcagttcatctggaaccaattccctttgatgtggagagagatctaataactccaacattcaaattgaaga |
379 |
Q |
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|||||||||||||| ||||||| | | ||||| || ||||||||||| ||||||||| | |||||||||||| |||| ||||| || |||||||||| |
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| T |
12515780 |
tctcagcttagaggatttgagcagctcaaagctatttatctggaaccatctccctttgacatagagagagatctagtaacgccaacgtttaaattgaaga |
12515681 |
T |
|
| Q |
380 |
gaccaca |
386 |
Q |
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||||||| |
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| T |
12515680 |
gaccaca |
12515674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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