View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18426_high_7 (Length: 390)
Name: NF18426_high_7
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 44 - 374
Target Start/End: Complemental strand, 29461207 - 29460877
Alignment:
| Q |
44 |
aacaagatattattatgaagggtaacataaaataagcttaaaagagataagaaaagaaatctagaatggatgtacaacaaatgcaaaacaactaaccatt |
143 |
Q |
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| T |
29461207 |
aacaagatattattatgaatggtaacataaaataagcttaaaagagataagaaaagaaatctagaatggatgtacaacaaatgcaaaacaactaaccatt |
29461108 |
T |
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| Q |
144 |
aatgctgtacctaatcaaacagttacatggaaaaattatgaagagagagaaaagatgggagagtttaatgtcttgggtatgaacggatagaagcatatag |
243 |
Q |
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| T |
29461107 |
aatgctgtacctaatcaaacagttacatggaaaaattatgaagagagagaaaagatgggagagtttaatgtcttgggtatgaacggatagaagcatatag |
29461008 |
T |
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| Q |
244 |
gtggcaagtaaaggaaattaatgtgaaggttacatgtgcttacatatacaccatgcttttgatcagtcacacaaatttgatatcaatgaatgttgttgca |
343 |
Q |
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| T |
29461007 |
gtggcaagtaaaggaaattaatgtgaaggttacatgtgcttacatatacaccatacttttgatcagtcacacaaatttgatatcaatgaatgttgttgca |
29460908 |
T |
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| Q |
344 |
ttctcaaaccgtcgtttttattagtactagt |
374 |
Q |
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| T |
29460907 |
ttctcaaaccgtcgtttttattagtactagt |
29460877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29461226 - 29461273
Alignment:
| Q |
1 |
aaatcaacataacaacatggagattgaagcagcaagtggtagcaacaa |
48 |
Q |
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| T |
29461226 |
aaatctacataacaacatggagattgaagcagcaagtggtagcaacaa |
29461273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 29425979 - 29425893
Alignment:
| Q |
66 |
taacataaaataagcttaaaagagataagaaaagaaatctagaatggatgtacaacaaatgcaaaacaactaaccattaatgctgtacc |
154 |
Q |
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| T |
29425979 |
taacataaaataagcttaaaagatataag-aatgaaatctagaat-gatgtatatcaaataaaaaacaactaacaattaatgttgtacc |
29425893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 29425890 - 29425850
Alignment:
| Q |
168 |
acatggaaaaattatgaagagagagaaaagatgggagagtt |
208 |
Q |
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| T |
29425890 |
acatggaaaaattatgaagagatagagtagatgggagagtt |
29425850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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