View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18426_high_9 (Length: 367)
Name: NF18426_high_9
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 33954216 - 33953913
Alignment:
| Q |
18 |
agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa |
117 |
Q |
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| T |
33954216 |
agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcagaaaca--gg-------------gaaccaaa |
33954132 |
T |
|
| Q |
118 |
ggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnntt |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
33954131 |
ggactacaaaaagctttttagagttggagaagcatagaaggatttactaccaccttattagaatgtaaataaatcaatagaatgagctgataaaaaaatt |
33954032 |
T |
|
| Q |
218 |
taaaattgaatttattgattgagaatagctaatacaaatcatgtatttatac-aaaagaaattacaaaatattacaaaagaattttaattatatactgta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
33954031 |
aaaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatatgctata |
33953932 |
T |
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| Q |
317 |
caaaagtcattcaaagaag |
335 |
Q |
| |
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||||||||||||||||||| |
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| T |
33953931 |
caaaagtcattcaaagaag |
33953913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 33976819 - 33976514
Alignment:
| Q |
18 |
agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtat--gaacct |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||| ||| | |||||| |
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| T |
33976819 |
agaccatgcttggcaaattttgaggatcaactgcttctagccgactttgatctatgactgaagaactcagaaacaa-ggaacaaaaaaaaaaaggaacct |
33976721 |
T |
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| Q |
116 |
aaggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnn |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| ||||||||| | | |
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| T |
33976720 |
aaggactacgaaaagctttttagaactggagaagcata----------ctaccaccttattatcatgtaaataaatcattagaatgagtagttaaaa--- |
33976634 |
T |
|
| Q |
216 |
tttaaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatactgt |
315 |
Q |
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| T |
33976633 |
ttaaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatgctat |
33976534 |
T |
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| Q |
316 |
acaaaagtcattcaaagaag |
335 |
Q |
| |
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|||||||||||||||||||| |
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| T |
33976533 |
acaaaagtcattcaaagaag |
33976514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 33961522 - 33961219
Alignment:
| Q |
18 |
agaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaagtatgaacctaa |
117 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||| ||| | |||||||| |
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| T |
33961522 |
agaccatgcttggaaaattttgaggatcaactgcttctagccgactttgatctatgactgaagaactcagaaacaa-ggaacaaaaaaaaaggaacctaa |
33961424 |
T |
|
| Q |
118 |
ggactacgaaaagctttttagagttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnntt |
217 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||| |||||| |||||| || ||||||||||||| ||||||||| | | || |
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| T |
33961423 |
ggactacgaaaaactttttagaactggagaagcata----------ctaccagcttattatcttgtaaataaatcattagaatgagtagttaaaa---tt |
33961337 |
T |
|
| Q |
218 |
taaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatactgtac |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
33961336 |
aaaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatgctatac |
33961237 |
T |
|
| Q |
318 |
aaaagtcattcaaagaag |
335 |
Q |
| |
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|||||||||||||||||| |
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| T |
33961236 |
aaaagtcattcaaagaag |
33961219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 219 - 335
Target Start/End: Complemental strand, 33993550 - 33993433
Alignment:
| Q |
219 |
aaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaa-gaaattacaaaatattacaaaagaattttaattatatactgtac |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
33993550 |
aaaattgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaaagaaattacaaaatattacaaaagaattttaattatatgctatac |
33993451 |
T |
|
| Q |
318 |
aaaagtcattcaaagaag |
335 |
Q |
| |
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|||||||||||||||||| |
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| T |
33993450 |
aaaagtcattcaaagaag |
33993433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 33983948 - 33983677
Alignment:
| Q |
7 |
aggagcagcacagaccatgcttgacaaattttgaggatcaactgcttcttgccgactttgatctatgattgaagaactcggaaacaaaggaacaagaaag |
106 |
Q |
| |
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||||||| || |||||||| ||||||| ||| ||||||| || ||| ||||| | ||||||||||||||||||||||| ||| | |||| |||||| |
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| T |
33983948 |
aggagcaacaaagaccatgtttgacaagtttggaggatcgacaactttttgccaaatttgatctatgattgaagaactc-aaaaatagggaaaaagaaaa |
33983850 |
T |
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| Q |
107 |
tatgaacctaaggact-acgaaaagcttttt-agagttggagaagc--atagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatga |
202 |
Q |
| |
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|| |||||||| ||| | ||||||||||| |||||||||||| | |||||||| ||||||| | ||||| ||||||||| ||||| ||||||||| |
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| T |
33983849 |
tagaaacctaagtactaaaaaaaagctttttaagagttggagaaccatatagaaggatttacta--gctttattatcatgtaaaaaaatctatagaatga |
33983752 |
T |
|
| Q |
203 |
gctgat--nnnnnnntttaaaattgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaaga |
275 |
Q |
| |
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| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33983751 |
gaaaattaaaaaaaaaaaaaaattgaatttattgattgagaatagctaatacaaatcatgtagttatacaaaaga |
33983677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 141 - 313
Target Start/End: Original strand, 8275222 - 8275392
Alignment:
| Q |
141 |
ttggagaagcatagaagggtttactaccaccttattgtcatgtaaataaatcaatagaatgagctgatnnnnnnntttaaaattgaatttattgattgag |
240 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||| ||||||||| ||||| |||||||||| ||| || |||||| ||| |||||||| || |
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| T |
8275222 |
ttggagaagcataggaggatttactagcaccttattatcatgtaaacaaatctatagaatgagtagataaaaa--ttaaaaatttaatctattgattaag |
8275319 |
T |
|
| Q |
241 |
aatagctaatacaaatcatgtatttatacaaaagaaattacaaaatattacaaaagaattttaattatatact |
313 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
8275320 |
aatagctaatacaaatcatgcatttatacaaaagaatttacaaaagattacaaaagaattttagttatatact |
8275392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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