View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18426_low_11 (Length: 328)
Name: NF18426_low_11
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 46406475 - 46406777
Alignment:
| Q |
19 |
gcttcttctagcagagaaaagtttgactgttgttattcagaggattcttataatgatttttaaataaacaatgcagtacaagaaacgatatatttttgaa |
118 |
Q |
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| T |
46406475 |
gcttcttctagcagagaaaagtttgactgttgttattcagaggattcttataatgatttttaaataaacaatgtagtacaagaaacgatatatttttgaa |
46406574 |
T |
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| Q |
119 |
ttaccacacatgttgcttcaaataaaaggggatatgtagttctgtttattctagtattgggagcatgtgtgtgtcactcaatcctattaatcatagtaaa |
218 |
Q |
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| T |
46406575 |
ttaccacacatgttgcttcaaataaaaggggatatgtagttctgtttattctagtattgggagcatgtgtgtgtcactcaatcctattaatcatagtaaa |
46406674 |
T |
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| Q |
219 |
atcactatgattaaaatcaaaccttagaagaaaacaaaattcagaatgaagtgtt-----tataaatcactgtaaaatcactatatattacaggctctgt |
313 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
46406675 |
atcaccatgattaaaatcaaaccttagaagaaaacaaaattcagaatgaagtgtttataatataaatcactgtaaaatcactatgtattacaggctctgt |
46406774 |
T |
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| Q |
314 |
ctc |
316 |
Q |
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||| |
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| T |
46406775 |
ctc |
46406777 |
T |
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