View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18426_low_12 (Length: 319)

Name: NF18426_low_12
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18426_low_12
NF18426_low_12
[»] chr3 (27 HSPs)
chr3 (11-302)||(18025177-18025468)
chr3 (81-282)||(27390816-27391017)
chr3 (17-86)||(27348305-27348374)
chr3 (18-86)||(27377645-27377713)
chr3 (80-149)||(28036704-28036773)
chr3 (99-206)||(27377476-27377590)
chr3 (18-77)||(12147109-12147168)
chr3 (80-149)||(28003461-28003530)
chr3 (81-152)||(26179541-26179612)
chr3 (81-152)||(26235972-26236043)
chr3 (108-154)||(26129518-26129564)
chr3 (80-154)||(27459607-27459681)
chr3 (99-149)||(28151203-28151253)
chr3 (11-64)||(1366778-1366831)
chr3 (99-140)||(28005119-28005160)
chr3 (81-149)||(27919615-27919683)
chr3 (81-149)||(27979743-27979811)
chr3 (81-203)||(26202074-26202194)
chr3 (101-154)||(26128207-26128260)
chr3 (101-154)||(26178257-26178310)
chr3 (25-64)||(27390745-27390784)
chr3 (116-154)||(11420327-11420365)
chr3 (108-142)||(26140160-26140194)
chr3 (99-136)||(8539836-8539873)
chr3 (110-138)||(1366912-1366940)
chr3 (99-151)||(19476134-19476186)
chr3 (16-52)||(26630753-26630789)
[»] chr2 (2 HSPs)
chr2 (80-159)||(22392459-22392538)
chr2 (17-86)||(22392574-22392643)
[»] scaffold1142 (1 HSPs)
scaffold1142 (80-177)||(1304-1401)
[»] scaffold0043 (2 HSPs)
scaffold0043 (17-86)||(53768-53837)
scaffold0043 (99-157)||(53892-53950)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 18025177 - 18025468
Alignment:
Q  11 cagagagaatacgagcaaaatagaggaaatgccttttgtttatgatcaatgactggtacatgtggctcattttctgatggtgaactcgccaactgattgc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18025177 cagagagaatacgagcaaaatagaggaaatgccttttgtttatgatcaatgactggtacatgtggctcattttctgatggtgaactcgccaactgattgc 18025276  T
Q  111 atagcatgaaaatgtaaattagttgcagcatagttttaagtagttgttagaataaaataaattttcttaaatatttcatttttagctttatatgcaagat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18025277 atagcatgaaaatgtaaattagttgcagcatagttttaagtagttgttagaataaaataaattttcttaaatatttcatttttagctttatatgcaagat 18025376  T
Q  211 tcggtggtactatatgaaattattatttctgtgagaaggtttgatggtgctatcaatttctccatgaaaatgttgctgatttatctattact 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18025377 tcggtggtactatatgaaattattatttctgtgagaaggtttgatggtgctatcaatttctccatgaaaatgttgctgatttatctattact 18025468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 282
Target Start/End: Original strand, 27390816 - 27391017
Alignment:
Q  81 tttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagttgttagaataaaataaattttcttaa 180  Q
    ||||||| ||||||| | |||||| |||||||| ||||||||| |||||||||||||||||| | ||||| |||||||  | ||||||  |||||||| |    
T  27390816 tttctgacggtgaaccctccaactaattgcataacatgaaaatttaaattagttgcagcatattattaagcagttgttccagtaaaatttattttcttta 27390915  T
Q  181 atatttcatttttagctttatatgcaagattcggtggtactatatgaaattattatttctgtgagaaggtttgatggtgctatcaatttctccatgaaaa 280  Q
    |||||| || | ||||||||||||||  ||  |||| | |||||| | |||||||||||  ||| ||||||||||| ||  |||||||||||| || |||    
T  27390916 atatttaatctgtagctttatatgcacaatgtggtgctgctatattacattattatttccatgaaaaggtttgatgctggcatcaatttctccttgtaaa 27391015  T
Q  281 tg 282  Q
    ||    
T  27391016 tg 27391017  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 27348374 - 27348305
Alignment:
Q  17 gaatacgagcaaaatagaggaaatgccttttgtttatgatcaatgactggtacatgtggctcattttctg 86  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27348374 gaatacgagaaaaatagaggaaatgccttttgtttatgatcaatgactggtacaggtggctcattttctg 27348305  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 27377713 - 27377645
Alignment:
Q  18 aatacgagcaaaatagaggaaatgccttttgtttatgatcaatgactggtacatgtggctcattttctg 86  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  27377713 aatacgagcaaaatagaggaaatgccttttgtttatgatcaatcacttgtacaggtggctcattttctg 27377645  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 28036773 - 28036704
Alignment:
Q  80 ttttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaa 149  Q
    |||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  28036773 ttttctgatgttgaaccctccaactgattgcataacatgaaaatgtaaattagttgcatcatatttttaa 28036704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 27377590 - 27377476
Alignment:
Q  99 ccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagt-------tgttagaataaaataaattttcttaaatatttcattt 191  Q
    |||||| |||||||||||||||||| |||||||||||||| ||| |||||||||||       ||||||| ||||||  |||||||| |||| || ||||    
T  27377590 ccaactaattgcatagcatgaaaatataaattagttgcagaatatttttaagtagttgctacctgttagagtaaaatttattttctttaatacttgattt 27377491  T
Q  192 ttagctttatatgca 206  Q
    ||||||| |||||||    
T  27377490 ttagcttaatatgca 27377476  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 12147168 - 12147109
Alignment:
Q  18 aatacgagcaaaatagaggaaatgccttttgtttatgatcaatgactggtacatgtggct 77  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  12147168 aatacaagcaaaatagaggaaatgccttttgtttatgatcaatcacttgtacgtgtggct 12147109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 28003530 - 28003461
Alignment:
Q  80 ttttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaa 149  Q
    |||||||||| ||||| | ||||||||||||||| ||||||||||||||||| ||||| |||| ||||||    
T  28003530 ttttctgatgttgaaccctccaactgattgcataacatgaaaatgtaaattacttgcaacatatttttaa 28003461  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 26179541 - 26179612
Alignment:
Q  81 tttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagta 152  Q
    |||||||||  |||| | |||||| ||||||| |||||||||||||| |||||||||||||| |||||||||    
T  26179541 tttctgatgtagaaccctccaactaattgcattgcatgaaaatgtaagttagttgcagcatatttttaagta 26179612  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 26235972 - 26236043
Alignment:
Q  81 tttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagta 152  Q
    |||||||||  |||| | |||||| ||||||| ||||||||||||||||||||||||||||| || ||||||    
T  26235972 tttctgatgtagaaccctccaactaattgcattgcatgaaaatgtaaattagttgcagcatatttataagta 26236043  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 26129518 - 26129564
Alignment:
Q  108 tgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagt 154  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||    
T  26129518 tgcatagcatgaaaatgtaatttagttgcagcatatttttaagtagt 26129564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 27459607 - 27459681
Alignment:
Q  80 ttttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagt 154  Q
    |||||||| | ||||| | ||||||| ||||||| ||||||||||||||||||||||| | || |||||||||||    
T  27459607 ttttctgacgttgaaccctccaactgcttgcataacatgaaaatgtaaattagttgcaacttatttttaagtagt 27459681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 28151253 - 28151203
Alignment:
Q  99 ccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaa 149  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  28151253 ccaactgattgcataacatgaaaatgtaaattagttgcaacatatttttaa 28151203  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1366778 - 1366831
Alignment:
Q  11 cagagagaatacgagcaaaatagaggaaatgccttttgtttatgatcaatgact 64  Q
    |||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  1366778 cagaaagaatacaagcaaaaaagaggaaataccttttgtttatgatcaatgact 1366831  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 28005160 - 28005119
Alignment:
Q  99 ccaactgattgcatagcatgaaaatgtaaattagttgcagca 140  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  28005160 ccaactaattgcatagcatgaaaatgtaaattagttgcagca 28005119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 27919683 - 27919615
Alignment:
Q  81 tttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaa 149  Q
    ||||||| | ||||| | ||||||||||||||| || |||||||||||||||||||| |||| ||||||    
T  27919683 tttctgacgttgaaccctccaactgattgcataacaagaaaatgtaaattagttgcaacatatttttaa 27919615  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 27979811 - 27979743
Alignment:
Q  81 tttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaa 149  Q
    ||||||| | ||||| | ||||||||||||||| || |||||||||||||||||||| |||| ||||||    
T  27979811 tttctgacgttgaaccctccaactgattgcataacaagaaaatgtaaattagttgcaacatatttttaa 27979743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 26202074 - 26202194
Alignment:
Q  81 tttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagttgttagaataaaataaattttcttaa 180  Q
    |||||||||  |||| | ||| |||| ||||||||||||||||||||||||||||||  ||| ||| ||||||| | |  ||  ||||  |||||||| |    
T  26202074 tttctgatgtagaaccctccagctgaatgcatagcatgaaaatgtaaattagttgcattatattttcaagtagtaggt-taactaaatttattttcttta 26202172  T
Q  181 atatttcatttttagctttatat 203  Q
    |||||| ||||||||||||||||    
T  26202173 atattt-atttttagctttatat 26202194  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 26128207 - 26128260
Alignment:
Q  101 aactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagt 154  Q
    |||| ||||||||||||||||||||||||||||||||  ||| ||| |||||||    
T  26128207 aactaattgcatagcatgaaaatgtaaattagttgcattatattttcaagtagt 26128260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 26178257 - 26178310
Alignment:
Q  101 aactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagt 154  Q
    |||| ||||||||||||||||||||||||||||||||  ||| ||| |||||||    
T  26178257 aactaattgcatagcatgaaaatgtaaattagttgcattatattttcaagtagt 26178310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 27390745 - 27390784
Alignment:
Q  25 gcaaaatagaggaaatgccttttgtttatgatcaatgact 64  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  27390745 gcaaaatagaggaaatgccttttgtttactatcaatgact 27390784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 11420365 - 11420327
Alignment:
Q  116 atgaaaatgtaaattagttgcagcatagttttaagtagt 154  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  11420365 atgaaaatgtaaattagttgcaacatatttttaagtagt 11420327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 26140160 - 26140194
Alignment:
Q  108 tgcatagcatgaaaatgtaaattagttgcagcata 142  Q
    |||||||||||||||||||| ||||||||||||||    
T  26140160 tgcatagcatgaaaatgtaatttagttgcagcata 26140194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 8539836 - 8539873
Alignment:
Q  99 ccaactgattgcatagcatgaaaatgtaaattagttgc 136  Q
    |||||||||||||||  |||||||||||||||||||||    
T  8539836 ccaactgattgcataaaatgaaaatgtaaattagttgc 8539873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 1366912 - 1366940
Alignment:
Q  110 catagcatgaaaatgtaaattagttgcag 138  Q
    |||||||||||||||||||||||||||||    
T  1366912 catagcatgaaaatgtaaattagttgcag 1366940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 19476186 - 19476134
Alignment:
Q  99 ccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagt 151  Q
    |||||| ||| ||||||| |||||||||||||||||| | |||| ||||||||    
T  19476186 ccaactaattccatagcaagaaaatgtaaattagttgtaacatatttttaagt 19476134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 26630789 - 26630753
Alignment:
Q  16 agaatacgagcaaaatagaggaaatgccttttgttta 52  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  26630789 agaatacaagcaaaataggggaaatgccttttgttta 26630753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 22392538 - 22392459
Alignment:
Q  80 ttttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagttgtta 159  Q
    |||||||| | ||||| | |||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  22392538 ttttctgacgttgaaccctccaactgattgcgtagcatgaaaatgtaaattagttgcagaatatttttaagtagttgtta 22392459  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 22392643 - 22392574
Alignment:
Q  17 gaatacgagcaaaatagaggaaatgccttttgtttatgatcaatgactggtacatgtggctcattttctg 86  Q
    |||||| || |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  22392643 gaatacaagaaaaatagaggaaatgccttttgtttatgatcaatgacttgtataggtggctcattttctg 22392574  T

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Target: scaffold1142 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 1401 - 1304
Alignment:
Q  80 ttttctgatggtgaactcgccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagttgttagaataaaataaattttct 177  Q
    |||||||||| ||| | | |||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||| |||| | ||||||  |||||||    
T  1401 ttttctgatgctgagccctccaactaattgcataccataaaaatgtaaattagttgcagcatatttttaagtagtagttaaagtaaaatttattttct 1304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 53768 - 53837
Alignment:
Q  17 gaatacgagcaaaatagaggaaatgccttttgtttatgatcaatgactggtacatgtggctcattttctg 86  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||| ||| | | |||||||||||||    
T  53768 gaatatgagcaaaatagagaaaatgccttttgtttatgatcaatgacttgtataggaggctcattttctg 53837  T

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Target: scaffold0043; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 53892 - 53950
Alignment:
Q  99 ccaactgattgcatagcatgaaaatgtaaattagttgcagcatagttttaagtagttgt 157  Q
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T  53892 ccaactgatagcatagcatgaaaatgtaaattagttgcacaatatttttaagtagttgt 53950  T

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