View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18426_low_14 (Length: 314)
Name: NF18426_low_14
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 26642547 - 26642264
Alignment:
| Q |
15 |
atgaaggaaacccaaatcacctgggccgagtttctaccatctttcctactaataggtgctaacccaaaatctcaaatttactaatacttgagatcacata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26642547 |
atgaaggaaacccaaatcacctgggccgagtttctaccatctttcctactaataggtgctaacccaaaatctcaaatttactaatacttgagatcacata |
26642448 |
T |
|
| Q |
115 |
tcaaaagggtggtcaaatatcaattaatttacactatgtctcacacacagcaagattggaaaaaaccacaaaaattgaaagtttaccatgtgaatcacca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26642447 |
tcaaaagggtggtcaaatatcaattaatttacactatgtctcacacacagcaagattggaaaaaaccacaaaaattgaaagtttaccatgtgaatcacca |
26642348 |
T |
|
| Q |
215 |
gccccaaaatcatggcgaatgacccatcctctactagttccaataacaatgacatcatttccagcagccatacaagtgataact |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26642347 |
gccccaaaatcatggcgaatgacccatcctctactagttccaataacaatgacatcatttccagcagccatacaagtgataact |
26642264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 39 - 298
Target Start/End: Complemental strand, 26638896 - 26638631
Alignment:
| Q |
39 |
gccgagtttctaccatctttcctactaataggtgctaacccaaaatctcaaatttactaatacttgagatcacatatcaaaagggtggtcaaatatcaat |
138 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| | |||||||||||||||| || | |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26638896 |
gccgagtttccgccatctttccaactaataggtgctaaac-aaaatctcaaatttaccaa-atttgagatcacatattaaaagggtggtcaaatatcaat |
26638799 |
T |
|
| Q |
139 |
taatttacactatgtctcacacacagcaagattggaaa--------aaaccacaaaaattgaaagtttaccatgtgaatcaccagccccaaaatcatggc |
230 |
Q |
| |
|
|||||| |||||| ||||||||||| | |||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26638798 |
taatttccactatctctcacacacaatatgattaaaaatcaatagaaaaacacaaaaattggaagtttaccatgtgaatcaccagccccaaaatcatggc |
26638699 |
T |
|
| Q |
231 |
gaatgacccatcctctactagttccaataacaatgacatcatttccagcagccatacaagtgataact |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26638698 |
gaatgacccatcctctactagttccaataacaatgacatcatttccagcagccatacaagtgataact |
26638631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 49738835 - 49738887
Alignment:
| Q |
27 |
caaatcacctgggccgagtttctaccatctttcctactaataggtgctaaccca |
80 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
49738835 |
caaatcacctaagccgagtttctaccatcttttctac-aataggtgctacccca |
49738887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University