View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18426_low_15 (Length: 312)
Name: NF18426_low_15
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 43 - 302
Target Start/End: Original strand, 3254359 - 3254623
Alignment:
| Q |
43 |
gtttgattcatatagtcattgctatttagtagaaaattatttggttgtttgttgttgttattttgtaatttctctttcctattttttccaacactcttta |
142 |
Q |
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| T |
3254359 |
gtttgattcatgtagtcattgctatttagtcgaaaattatttggttgtttgttgttgttattttgtaatttctctttcctattttttccaacactcttta |
3254458 |
T |
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| Q |
143 |
gttttcctttcttaaaaatatttgttagacccaagtatatatatgaaggtggcctaggaat-----------aagaaaccaacacatgtctccttgagaa |
231 |
Q |
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| T |
3254459 |
gttttcctttcttaaaaatatttgttagacccaag------tatgaaggtggcctaggaatcagaacagccagagaaaccaacacatgtctccttgagaa |
3254552 |
T |
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| Q |
232 |
gctagtttgggatatgtttcaatattctaataaattatgggttgatctcctctccgataagtatgatgatg |
302 |
Q |
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| T |
3254553 |
gctagtttgggatatgttccaatcttctaataaattatgggttgatctcctctccgataagtatgatgatg |
3254623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 3274011 - 3274055
Alignment:
| Q |
91 |
ttgttgttgttattttgtaatttctctttcctattttttccaaca |
135 |
Q |
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| T |
3274011 |
ttgttgttgatgtgttgtaatttctctttcctaatttttccaaca |
3274055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 24872946 - 24872993
Alignment:
| Q |
230 |
aagctagtttgggatatgtttcaatattctaataaattatgggttgat |
277 |
Q |
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| T |
24872946 |
aagcttgtttgggatatggttcaatattcaaagaaattatgggttgat |
24872993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 12645343 - 12645266
Alignment:
| Q |
218 |
tgtctccttgagaagctagtttgggatatgtttcaatattctaataaattatgggttgatctcctctccgataagtat |
295 |
Q |
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| T |
12645343 |
tgtctcctttggaagctagtttgggatattgtccaatgctccaaaaaattatgggttgatctcctttctgacaagtat |
12645266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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