View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18426_low_5 (Length: 520)
Name: NF18426_low_5
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 156 - 506
Target Start/End: Complemental strand, 40115481 - 40115134
Alignment:
| Q |
156 |
tatattacctcgttttctcttcttcacatacaaacaaattataccatcaggaatttgtttcagtaataaatgatgcgataaactatttgtggtaaattat |
255 |
Q |
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| T |
40115481 |
tatattacctcgttttctcttcttcacatacaaacaaattataccatcaggaatttgtttcagtagtaaatgatgtgatgaactatttgtggtaaattat |
40115382 |
T |
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| Q |
256 |
gtcactttattgtatctcaatccattcaataagaatttttaaaggatttaaaaaccacgactatatagattgactatttgtggtaaactatcaagaggaa |
355 |
Q |
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| T |
40115381 |
gtcactttattgtatctcaattcattctataagaatttttaaaggatttaaaaaccacgactatataga-tgactatttgtggtaaactatcaagaggga |
40115283 |
T |
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| Q |
356 |
ttgcatattccaccacttaatactcaacnnnnnnnnagggagacttaatattcaacttttgaaataagagtataagaaaatattaattgactaagataag |
455 |
Q |
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| T |
40115282 |
ttgcatattccaccacttaatactcaac-tttttttaggg-gacttaatattcaacttttgaaataagagtataagaaaatattaattgactaagataag |
40115185 |
T |
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| Q |
456 |
gctagcacatacctttaacaaaaactttctgacataaactttgttatttgt |
506 |
Q |
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| T |
40115184 |
gctagtacatacctttaacaaaaactttctgacataaactttgttatttgt |
40115134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 40115637 - 40115557
Alignment:
| Q |
1 |
ctatgatctttgtcctatgattccatgattcacaacaatatcatcatatcattattactccaaatgagtaaaaaatgacaa |
81 |
Q |
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| T |
40115637 |
ctatgatctttgtcctatgattccatgattcacaacaatatcatcagatcattattactccaaatgagtaaaaaatgacaa |
40115557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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