View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18426_low_9 (Length: 386)
Name: NF18426_low_9
Description: NF18426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18426_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 51998908 - 51998544
Alignment:
| Q |
17 |
acaatcatggtgtcaattataatttctcttcattatttaatttattcgacatgtttagtcaaattaaattaaatcacaaaacacagtaaataagccaatc |
116 |
Q |
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| T |
51998908 |
acaatcatgatgtcaattataatttctcttcattatttaatttattcgacatgtttagtcaaattaaat-----cacaaaacacagtaaataagccaatc |
51998814 |
T |
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| Q |
117 |
tgattcatgatatcataattgattcggataccattgaagggactgattcatggtttgataattggcttttataccactgaagcgaataattaaaatttat |
216 |
Q |
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| T |
51998813 |
tgattcatgatatcataattgattcggataccattgaaggggctgattcatggtttgataattggcttttataccactgaagcgaataattaaaatttat |
51998714 |
T |
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| Q |
217 |
tt-cccgggatcaatacaaattcagtgatatgaatgttaccttttgaagtgtagaaattgtgttgatgaaacactttgtttgttgaaacgctttcgatca |
315 |
Q |
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| T |
51998713 |
tttcccgggatcaatacaaattcagcgatatgaatgttaccttttgaagtgtagaaatagtgttgatgaaacactttgtttgttgaaacgttttcgatca |
51998614 |
T |
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| Q |
316 |
cgagcaaatcaaagtatcgatttctctactcaattcacacaaacaaaccttctcaagtgacctatgctac |
385 |
Q |
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| T |
51998613 |
cgagcaaagcaaagtatcgatttctttactcaatccacacgaacaaaccttctcaagtgacctgtgctac |
51998544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 54333184 - 54333258
Alignment:
| Q |
295 |
ttgttgaaacgctttcgatcacgagcaaatcaaagtatcgatttctctactcaattcacacaaacaaaccttctc |
369 |
Q |
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||||||||| | ||||||||||||||||| ||||||| |||| |||||||||| | |||| |||| |||||||| |
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| T |
54333184 |
ttgttgaaaagttttcgatcacgagcaaaacaaagtaacgatgtctctactcagtctacacgaacagaccttctc |
54333258 |
T |
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