View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18427_high_2 (Length: 202)
Name: NF18427_high_2
Description: NF18427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18427_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 3438610 - 3438785
Alignment:
| Q |
14 |
attattctacagatcgcaacaacccttgtaaaccaactgcactttctggtttatctccctatttgcattttggacagatatctgctcaaagatgtgcttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438610 |
attattctacagatcgcaacaacccttgtaaaccaactgcactttctggtttatctccctatttgcattttggacagatatctgctcaaagatgtgcttt |
3438709 |
T |
|
| Q |
114 |
agaagctcgtaagctacgagcttcatatcctcaggtttgttttactatgctgtttatgttgcttcattttgttttt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438710 |
agaagctcgtaagctacgagcttcatatcctcaggtttgttttactatgctgtttatgttgcttcattttgttttt |
3438785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University