View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18428_high_1 (Length: 875)

Name: NF18428_high_1
Description: NF18428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18428_high_1
NF18428_high_1
[»] chr6 (1 HSPs)
chr6 (1-858)||(14734889-14735734)


Alignment Details
Target: chr6 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 1 - 858
Target Start/End: Complemental strand, 14735734 - 14734889
Alignment:
Q  1 aataacgccaatacttacttgttgattttccttaaagtaannnnnnnaacactagcatatgggtcactggtattgagggttacatattataagaaaatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14735734 aataacgccaatacttacttgttgattttccttaaagtaatttttgtaacactagcatatgggtcactggtattgagggttacatattataagaaaatac 14735635  T
Q  101 agcaaaactgggccccagactgcactacagaactacggaacaagtcgacaacacaactgtgctgtcaaaactcactccatgcgagttataagctagttac 200  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14735634 agcaaaactgggccccggactgcactacagaactacggaacgagtcgacaacacaactgtgctgtcaaaactcactccatgcgagttataagctagttac 14735535  T
Q  201 tcgctcctgactcgcttcaggctagttctctctggagtttactcgctccaggtcagtttagcttgctttaagcgagttaggacagagcaggacctgtaga 300  Q
    |||||           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14735534 tcgct-----------tcaggcgagttctctctggagtttactcgctccaggtcagtttagcttgctttaagcgagttaggacagagcaggacctgtaga 14735446  T
Q  301 attcgtatcttagctcaaaacatcaattccaagtacccaaatgcacgtatcgagtctagaaatcacgtaa---ccttaattcatcattatggcaagaatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  14735445 attcgtatcttagctcaaaacatcaattccaagtacccaaatgcacgtatcgagtctagaaatcacgtaaacaccttaattcatcattatggcaagaatt 14735346  T
Q  398 aacaagttaatcaagcaaaacatagagttgtggagataatcacgtctacacaaaacttagaaaaccacgttgtctcacaccgaactcttttctaaccggc 497  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14735345 aacaagttaatcaagcaaaacatagagttgtggagataatcacatctacacaaaacttagaaaaccacgttg-ctcacaccgaactcttttctaaccggc 14735247  T
Q  498 tgacattttt-gtttatacttaaagtcagtgaactaagaaaatcaaagaccataccagtggtgattccaattttactcgagtcccatcattttgaacctg 596  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14735246 tgacattttttgtttatacttaaagtcagtgaactaagaaaatcaaagaccataccagtggtgattccagttttactcgagtcccatcattttgaacctg 14735147  T
Q  597 gtgcttcaagaatttcttgctcatctctcaatacttctcactagaaatggctaagcgcttgactaaccgctacttatcctatctcatatatgaaactcct 696  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    |||||||||||    
T  14735146 gtgcttcaagaatttcttactcatctctcaatacttctcactagaaatggctaaccgcttgactaacggctacttatcctatctc----atgaaactcct 14735051  T
Q  697 attccaaggtccaagaatttgcgtattccttaaacttcttactaatcaatttccggtgcgccactttgattcatcatttatatatcattagccataatca 796  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  14735050 attccaaggtccaagaatttgcgtattccttaaacttcttactaatcaatttccactgcgccactttgattcatcatttatatatcattagccataatca 14734951  T
Q  797 ccaatctgtgagactcgtgggtattacactctcattaatacatggttatttaatttccaagt 858  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14734950 ccaatccgtgagactcgtgggtattacactctcattaatacatggttatttaatttccaagt 14734889  T

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