View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18428_low_2 (Length: 509)
Name: NF18428_low_2
Description: NF18428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18428_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 179 - 494
Target Start/End: Original strand, 46222261 - 46222577
Alignment:
| Q |
179 |
gcgccacaaactccttctccacaatcctcggtcacggtggcttc-ggtcctgtctactccggcactctcccttcctccggtaaacccatcgccgtcaaac |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46222261 |
gcgccacaaactccttctccacaatcctcggtcacggtggcttccggtcctgtctactccggcactctcccttcctccggtaaacccatcgccgtcaaac |
46222360 |
T |
|
| Q |
278 |
tcatgaactctacctccctcggcgtcgtcggcagccaaggagaacgcgagtatcacaacgaactcttcttcgcttccagactccaatccgaacaccttgt |
377 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46222361 |
tcatgaactccacctccctcggcgtcgtcggcagccaaggagaacgcgagtatcacaacgaactcttcttcgcttccagactccaatccgaacaccttgt |
46222460 |
T |
|
| Q |
378 |
ccctgctatcggtttctcctctgatcctaaacgccgtcgttttgttctcgtttatgatctcatgaaaaacggtaacctccacgacgctctttttcgtcgt |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46222461 |
acctgctatcggtttctcctctgatcctaaacgccgtcgttttgttctcgtttatgatctcatgaaaaacggtaacctccacgacgctctttttcgtcgt |
46222560 |
T |
|
| Q |
478 |
aaaagccttgaattaac |
494 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46222561 |
aaaagccttgaattaac |
46222577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 46222096 - 46222199
Alignment:
| Q |
14 |
caccaccaccgcttcaactaaacaacaactacaccaccaccgtcatccctggttgctctttcatcctcgcacttctccactgcctccgcaacaaaaaacg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46222096 |
caccaccaccgcttcaactaaacaacaaccacaccaccaccgtcatccccggttgctctttcatcctcgcacttctccactgcctccgcaacaaaaaacg |
46222195 |
T |
|
| Q |
114 |
aacc |
117 |
Q |
| |
|
|||| |
|
|
| T |
46222196 |
aacc |
46222199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University