View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18428_low_3 (Length: 462)
Name: NF18428_low_3
Description: NF18428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18428_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 41 - 446
Target Start/End: Complemental strand, 7223333 - 7222936
Alignment:
| Q |
41 |
cactgcatattataagtcctcaaacaagaatccaaatatttgatctgaacattgacgagttattatgattatatatatacaaataaaagacaaaatagat |
140 |
Q |
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| T |
7223333 |
cactgcatattataaggcctcaaacaagaatccaaatacttgatctgaacattgacgagttattatgattatatatatacaaataaaagacaaaatagat |
7223234 |
T |
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| Q |
141 |
aggtactatgttagatgaagaagatactaaaaaacatcctagatcatagaggtatgtgaatcgagtttcacgcgccatagtttccattttgaaattagtt |
240 |
Q |
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| T |
7223233 |
aggtactatgttagatgaagaagatacta-aaaacatcctagatcatagaggtatgtgaatcgagtttcacgcg--atagtttccattttgaaattagtt |
7223137 |
T |
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| Q |
241 |
gtatgacagggcaggttgatggnnnnnnngttattggacgattacacagcattggctgaccggagttcggattttatttnnnnnnnnnnnnnnnnnnnnn |
340 |
Q |
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| T |
7223136 |
gtatgacagggcaggttgatggtttttttgttattggacgattacaatgcattggctgaccggagttcggattttattt-aaaaaaataaaaataataat |
7223038 |
T |
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| Q |
341 |
tggtgttatagtaagtcaacttcatcaaacgtacagtagtgttgtggaggatgaaaaatctaacacagaagaatcaaaatcaaggaaagccaagagaagg |
440 |
Q |
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| T |
7223037 |
tggtgttatagcaagtcaacttcatcaa----acagtagtgttgtggaggatgaaaaatctaacacagaagaatcaaaatcaaggaaagccaagagaagg |
7222942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 11432000 - 11432073
Alignment:
| Q |
373 |
acagtagtgttgtggaggatgaaaaatctaacacagaagaatcaaaatcaaggaaagccaagagaagggaaaac |
446 |
Q |
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| T |
11432000 |
acagtggtgttgtggaggacgaaaaatctaacacagaagaatcaaaatcaaggaaagccaagagaagggaaaac |
11432073 |
T |
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