View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18428_low_6 (Length: 228)

Name: NF18428_low_6
Description: NF18428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18428_low_6
NF18428_low_6
[»] chr8 (9 HSPs)
chr8 (19-213)||(18139649-18139843)
chr8 (19-212)||(18081992-18082188)
chr8 (19-213)||(18096411-18096602)
chr8 (154-213)||(13025063-13025122)
chr8 (162-211)||(6117562-6117611)
chr8 (162-211)||(12712121-12712170)
chr8 (154-206)||(12705464-12705516)
chr8 (154-201)||(12646833-12646880)
chr8 (160-212)||(12724620-12724672)
[»] chr4 (1 HSPs)
chr4 (19-114)||(37875453-37875548)
[»] chr1 (3 HSPs)
chr1 (140-213)||(22535491-22535564)
chr1 (159-215)||(17747848-17747904)
chr1 (156-200)||(368498-368542)
[»] chr5 (2 HSPs)
chr5 (156-210)||(27173761-27173815)
chr5 (162-211)||(28994682-28994731)
[»] scaffold0134 (1 HSPs)
scaffold0134 (157-209)||(16557-16609)
[»] chr2 (1 HSPs)
chr2 (156-200)||(16920702-16920746)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 18139649 - 18139843
Alignment:
Q  19 gtagttgcaatgaatgtctctttgctaaagttgaatgacactatatcattatcatgtaattcggtaaaccagtggcaaaatccattcaagttcaccatat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18139649 gtagttgcaatgaatgtctctttgctaaagttgaatgacactatatcattatcatgtaattcggtaaaccagtggcaaaatccattcaagttcaccatat 18139748  T
Q  119 acctacctgtgtaagaaacatgcatatcatcaaatccatcaagtttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcatac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18139749 acctacctgtgtaagaaacatgcatatcatcaaatccatcaagtttcctccaagaatcacttttgagactatatatctcccaaaaaggttcatac 18139843  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 18082188 - 18081992
Alignment:
Q  19 gtagttgcaatgaatgtctctttgctaaagttgaatgacactatatcattatcatgtaattcggtaaaccagtggcaaaatccattcaagttcaccatat 118  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||  || ||| |||||||||||||||||||| ||||||||||||     
T  18082188 gtagttgcaaagaatgtctctttgctaaagttgaaggacacaatatcattatcaggtccttgggtcaaccagtggcaaaatccattaaagttcaccatag 18082089  T
Q  119 ac---ctacctgtgtaagaaacatgcatatcatcaaatccatcaagtttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcata 212  Q
    ||    |||||| | || || || ||||||||||||| ||||| ||||||||||||||||||||  | || ||||||||||||||| |||| |||||    
T  18082088 acgttatacctgggaaataatcaggcatatcatcaaacccatcgagtttcctccaagaatcactccttagactatatatctcccaacaaggatcata 18081992  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 18096602 - 18096411
Alignment:
Q  19 gtagttgcaatgaatgtctctttgctaaagttgaatgacactatatcattatcatgtaattcggtaaaccagtggcaaaatccattcaagttcaccatat 118  Q
    |||||||||| ||||||||| |||||||||| ||| ||||||| ||||       ||  || ||| |||||||||||||||||||||||||||||||||     
T  18096602 gtagttgcaacgaatgtctccttgctaaagtcgaaggacactacatcag------gtccttgggtcaaccagtggcaaaatccattcaagttcaccatag 18096509  T
Q  119 acct---acctgtgtaagaaacatgcatatcatcaaatccatcaagtttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcatac 213  Q
    || |   ||| | |||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||||    
T  18096508 acattataccagggtaagaaacaggcatatcatcaaatccatcaagtttcctccaagaatcacgcttgaggctatacatctcccaaaatggttcatac 18096411  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 13025063 - 13025122
Alignment:
Q  154 ccatcaagtttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcatac 213  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||| | ||||| ||||||    
T  13025063 ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatac 13025122  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 6117611 - 6117562
Alignment:
Q  162 tttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcat 211  Q
    |||||||||||| | |||||||||||||||||||||||| ||||| ||||    
T  6117611 tttcctccaagagttacttttgaggctatatatctcccagaaagggtcat 6117562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 12712121 - 12712170
Alignment:
Q  162 tttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcat 211  Q
    |||||||||||| | |||||||||||||||||||||||| ||||| ||||    
T  12712121 tttcctccaagagttacttttgaggctatatatctcccagaaagggtcat 12712170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 12705516 - 12705464
Alignment:
Q  154 ccatcaagtttcctccaagaatcacttttgaggctatatatctcccaaaaagg 206  Q
    ||||||| |||||||||||| | ||||||||||||||||| |||||| |||||    
T  12705516 ccatcaattttcctccaagagttacttttgaggctatataactcccagaaagg 12705464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 12646880 - 12646833
Alignment:
Q  154 ccatcaagtttcctccaagaatcacttttgaggctatatatctcccaa 201  Q
    |||||||||||||||||||| | |||| ||||||| ||||||||||||    
T  12646880 ccatcaagtttcctccaagagttacttctgaggctgtatatctcccaa 12646833  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 12724672 - 12724620
Alignment:
Q  160 agtttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcata 212  Q
    |||||||||||||| | |||| ||||||||||||||||| | || ||||||||    
T  12724672 agtttcctccaagagttacttctgaggctatatatctccaagaatggttcata 12724620  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 37875548 - 37875453
Alignment:
Q  19 gtagttgcaatgaatgtctctttgctaaagttgaatgacactatatcattatcatgtaattcggtaaaccagtggcaaaatccattcaagttcacc 114  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||||| ||||| ||   | ||| ||||||||||||||||||||||||||||||    
T  37875548 gtagttgcaataaatgtctctttgctaaagttgaaggacactgtatcaatatcaggtccatgggtcaaccagtggcaaaatccattcaagttcacc 37875453  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 22535491 - 22535564
Alignment:
Q  140 gcatatcatcaaatccatcaagtttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcatac 213  Q
    |||||| |||||  |||||||||||||||||||| | |||| | ||||| ||||||||||||||||| ||||||    
T  22535491 gcatatgatcaacaccatcaagtttcctccaagagttacttctaaggctgtatatctcccaaaaagggtcatac 22535564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 17747904 - 17747848
Alignment:
Q  159 aagtttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcatactg 215  Q
    ||||||||||||||| | |||| |||||||||||||||| || ||||| ||||||||    
T  17747904 aagtttcctccaagagttacttatgaggctatatatctcacagaaagggtcatactg 17747848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 368542 - 368498
Alignment:
Q  156 atcaagtttcctccaagaatcacttttgaggctatatatctccca 200  Q
    |||||||||||||||||||| | ||||  ||||||||||||||||    
T  368542 atcaagtttcctccaagaattatttttatggctatatatctccca 368498  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 27173761 - 27173815
Alignment:
Q  156 atcaagtttcctccaagaatcacttttgaggctatatatctcccaaaaaggttca 210  Q
    |||||||||||||||||| | |||||| ||||| ||||||||||| |||||||||    
T  27173761 atcaagtttcctccaagagttactttttaggctgtatatctcccagaaaggttca 27173815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 28994731 - 28994682
Alignment:
Q  162 tttcctccaagaatcacttttgaggctatatatctcccaaaaaggttcat 211  Q
    ||||||||| ||||||||||| || |||||||||||||| ||||| ||||    
T  28994731 tttcctccatgaatcactttttagactatatatctcccataaagggtcat 28994682  T

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Target: scaffold0134 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 16557 - 16609
Alignment:
Q  157 tcaagtttcctccaagaatcacttttgaggctatatatctcccaaaaaggttc 209  Q
    |||||||||||||| || | |||| | ||||||||||||||||| ||||||||    
T  16557 tcaagtttcctccacgagttacttgttaggctatatatctcccataaaggttc 16609  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 16920746 - 16920702
Alignment:
Q  156 atcaagtttcctccaagaatcacttttgaggctatatatctccca 200  Q
    |||||||||||||||||||| |||| | || ||||||||||||||    
T  16920746 atcaagtttcctccaagaattacttcttagactatatatctccca 16920702  T

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