View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18429_high_2 (Length: 448)
Name: NF18429_high_2
Description: NF18429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18429_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 53688477 - 53688891
Alignment:
| Q |
19 |
gtacttaattccctggtctagaaagataagtatttatgaatttcaggatcaactaatctactatgattgattttcattactgttacggctagtttatttt |
118 |
Q |
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| T |
53688477 |
gtacttaattccctggtctagaaagataagtatttatgaatttcaggatcaactaatctgctatgattgattttcattactgttacggctagtttatttt |
53688576 |
T |
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| Q |
119 |
gactttatcgtgtttattgtgaagaagtttttaaaaagaatcttggtatactttttgttcatgactggggattatatatcttggcctgattgtttgagag |
218 |
Q |
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| T |
53688577 |
gactttatcgtgtttattgtgaagaagtttttaaaaagaatcttggtatactttttgttcatgacaggggattatatatcttggcctgattgtttgagag |
53688676 |
T |
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| Q |
219 |
aggttaatagttgctatgacaggtcagaaacagtagccaaatatttggatgagaaggaactatggagcacaaactcggacttaaatatgccaacaacatt |
318 |
Q |
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| T |
53688677 |
aggttaatagttgctatgacaggtcagaaacagtagccaaatatttggatgagaaggaactatggagcacaaactcggacttaaatatgccaacaacatt |
53688776 |
T |
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| Q |
319 |
gcaaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaaggcttggtgttgcataatgttcatagtacctgggtttcaatccggaggg |
418 |
Q |
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| T |
53688777 |
gcaaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaacgcttggtgttgcataatgttcatagtacctgggtttcaatccggaggg |
53688876 |
T |
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| Q |
419 |
actacatctgaatct |
433 |
Q |
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| T |
53688877 |
actacatctgaatct |
53688891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 53695601 - 53695794
Alignment:
| Q |
43 |
gataagtattta-tgaatttcaggatcaactaatctactatgattgattttc-attactgttacggctagtttattttgactttatcgtgtttattgtga |
140 |
Q |
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| T |
53695601 |
gataagtattttgtgaatgtcaggatcaactaatctactatgattgattttttattaccgttacagttagtttattctgactttacagtgtttgttgtgg |
53695700 |
T |
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| Q |
141 |
aga--agtttttaaaaagaatcttggtatactttttgttcatgactggggattatatatcttggcctgattgtttgagagaggttaatagttgc |
232 |
Q |
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| T |
53695701 |
agagaagtttctaaaaaacatcatggtataatttttgtctatgacaggggattatatatcttggccatattgtttgagagaggtaaatagttgc |
53695794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 53695850 - 53695920
Alignment:
| Q |
312 |
caacattgcaaaaattctatgttgagaatttggagcatgatgatgaatagcagaagaaggcttggtgttgc |
382 |
Q |
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| T |
53695850 |
caacattgcaaaaacactatgttgagaatctggagcatgatgatgaatagcagaagaaggcttggtgttgc |
53695920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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