View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18429_low_1 (Length: 693)
Name: NF18429_low_1
Description: NF18429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18429_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 18 - 683
Target Start/End: Complemental strand, 49386137 - 49385472
Alignment:
| Q |
18 |
attggaaaagaagaaattatcatcatgagttgatgcataagatgttgttttttcatgatcaaaagtactcatgatcatgtcattgttgaatgaggaaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49386137 |
attggaaaagaagaaattatcatcatgagttgatgcataagatgttgttttttcatgatcaaaagtactcatgatcatgtcattgttgaatgaggaaagg |
49386038 |
T |
|
| Q |
118 |
ttttgatcatttttactagtgtgtgcagtgttaaggtgagaaagagtagtattttgattggtttgagtgttagtgagtaactgtgaagctggtaagagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49386037 |
ttttgatcatttttactagtgtgtgcagtgttaaggtgagaaagagtagtattttgattggtttgagtgttagtgagtaactgtgaagctggtaagagag |
49385938 |
T |
|
| Q |
218 |
tttgaagatccataggagaagaaacaagtgtgtgaaaattgatagtatcagagtaaatgaaattagttctagcttgatttcctttcatggaaatagcagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49385937 |
tttgaagatccataggagaagaaacaagtgtgtgaaaattgatagtatcagagtaaatgaaattagttctagcttgatttcctttcatggaaatagcagc |
49385838 |
T |
|
| Q |
318 |
tctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaatttcagcagcatatctaccc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49385837 |
tctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaatttcagcagcatatctaccc |
49385738 |
T |
|
| Q |
418 |
caaggtcttctcctaacaccaagaaaccttcctggttctgattgtttccttcttcctcttttttcaccactaggtgatgtgtttgtgtttctttgaagta |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49385737 |
caaggtcttctcctaacaccaagaaaccttcctggttctgattgtttccttcttcctcttttttcaccactaggtgatgtgtttgtgtttctttgaagta |
49385638 |
T |
|
| Q |
518 |
gagacagacacatttgtgtttgatttgtttcatgatatcctttgaaagatgaatctgatgtgatctttttagaggttgacatggctgagaaaatggcaaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49385637 |
gagacagacacatttgtgtttgatttgtttcatgatatcctttgaaagatgaatctgatgtgatctttttagaggttgacatggctgagaaaatggcaaa |
49385538 |
T |
|
| Q |
618 |
gaaaatatggattgaataatgaggctgcagaaggtaagaatggttatgttatgacttatgatgatg |
683 |
Q |
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| T |
49385537 |
gaaaatatggattgaataatgaggctgcagaaggtaagaatggttatgttatgacttgtgatgatg |
49385472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 8e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 298 - 487
Target Start/End: Original strand, 6507641 - 6507830
Alignment:
| Q |
298 |
cctttcatggaaatagcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaa |
397 |
Q |
| |
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||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| || || | |||||||||||||||||||| ||| ||||||| |
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| T |
6507641 |
cctttgatggaaagagcagctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatctctaa |
6507740 |
T |
|
| Q |
398 |
tttcagcagcatatctaccccaaggtcttctcctaacaccaagaaaccttcctggttctgattgtttccttcttcctcttttttcaccac |
487 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| ||| || |||| ||||||||||| |||| |
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| T |
6507741 |
tttcagcagcatatctaccccaaggtcttctccttacaccaagaaacttacctggttctgcttgcttttttctgcctcttttttcgccac |
6507830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 4420145 - 4420202
Alignment:
| Q |
312 |
agcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaa |
369 |
Q |
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| T |
4420145 |
agcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaa |
4420202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 25986059 - 25986002
Alignment:
| Q |
312 |
agcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaa |
369 |
Q |
| |
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|||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||| |
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| T |
25986059 |
agcagctctatcataagccaaagcagcttcttcagcagtgtcaaaagtaccaagccaa |
25986002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 584 - 632
Target Start/End: Original strand, 40001303 - 40001351
Alignment:
| Q |
584 |
ttttagaggttgacatggctgagaaaatggcaaagaaaatatggattga |
632 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
40001303 |
ttttagaagttgacatggctaagaaaatggcaaagaaaatatggattga |
40001351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 441
Target Start/End: Original strand, 43848271 - 43848378
Alignment:
| Q |
334 |
gcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaatttcagcagcatatctaccccaaggtcttctcctaa |
433 |
Q |
| |
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|||||||||| ||||| ||||| || || | ||||||||| ||||| || ||||| ||||||||||| |||||||| ||||| |||||| | |||| |
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| T |
43848271 |
gcagcttcttctgcagtgtcaaatgtgcctaaccaatgtctctctttggtataagggttcctaatttcagctgcatatcttccccatggtctttttctaa |
43848370 |
T |
|
| Q |
434 |
caccaaga |
441 |
Q |
| |
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|||||||| |
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| T |
43848371 |
caccaaga |
43848378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 33470033 - 33469977
Alignment:
| Q |
312 |
agcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagcca |
368 |
Q |
| |
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||||||| |||||||||| | ||| ||||||| ||| || ||||||||||||||||| |
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| T |
33470033 |
agcagctttatcataagccaaagctgcttcttcagctgtgtcaaaagtaccaagcca |
33469977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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