View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18429_low_4 (Length: 399)
Name: NF18429_low_4
Description: NF18429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18429_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 39230685 - 39231070
Alignment:
| Q |
1 |
aacactaacacaaaactcattcttctccatccatatatccaaaaacaaggaaactcaaatcgattatggcttctagcattcatatcaattctcactttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39230685 |
aacactaacacaaaactcattcttctccatccatatatccaaaaacaaggaaactcaaatcgattatggcttctagcattcatatcaattctcactttag |
39230784 |
T |
|
| Q |
101 |
cattccttgcaacactcatttacacaagagacagagaatcaaccacaaacactgcaataatttcttctgttattaccactcctgtttctgcaccattacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39230785 |
cattccttgcaacactcatttacacaagagacagagaatcaaccacaaacactgcaataatttcttctgttattaccactcctgtttctgcaccattacc |
39230884 |
T |
|
| Q |
201 |
agcaacagttatcaacactctccttcactatgcttcaaaatccaacgactcataccatatgacatactctgatctcaaaccaatctccgacgtgcttcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39230885 |
agcaacagttatcaacactctccttcactatgcttcaaaatccaacgactcataccatatgacatactctgatctcaaaccaatctccgacgtgcttcga |
39230984 |
T |
|
| Q |
301 |
aagtgttcatcgccatgtaacttgcttgtttttggcctcacaccagagactcttctatggaaagcacttaaccataatggaaaaac |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39230985 |
aagtgttcatcgccatgtaacttgcttgtttttggcctcacaccagagactcttctatggaaagcacttaaccataatggaaaaac |
39231070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University