View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18429_low_9 (Length: 209)

Name: NF18429_low_9
Description: NF18429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18429_low_9
NF18429_low_9
[»] chr6 (9 HSPs)
chr6 (28-195)||(33414685-33414852)
chr6 (29-196)||(33293092-33293259)
chr6 (39-195)||(33258324-33258480)
chr6 (29-130)||(31564921-31565022)
chr6 (85-196)||(28872980-28873091)
chr6 (39-106)||(33269673-33269740)
chr6 (20-192)||(33395163-33395335)
chr6 (75-192)||(33279082-33279198)
chr6 (143-194)||(33384166-33384217)
[»] chr2 (1 HSPs)
chr2 (19-196)||(17447695-17447873)
[»] scaffold0428 (2 HSPs)
scaffold0428 (39-195)||(2445-2601)
scaffold0428 (75-192)||(15055-15171)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 9e-69; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 33414685 - 33414852
Alignment:
Q  28 catcgtgaatgtatgtaccgattctttcttcagctgctagtcttgcagatttcttatcagcggatgagagaccctttttcctgaggtatgcttgcgcctt 127  Q
    |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33414685 catcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcctgagatatgcttgcgcctt 33414784  T
Q  128 ttcgagatcgccttctttttcagcaagtgctttcttacagtccatcatccctgcaccggtttcttctc 195  Q
    ||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  33414785 ttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgcaccagtttcttctc 33414852  T

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Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 33293092 - 33293259
Alignment:
Q  29 atcgtgaatgtatgtaccgattctttcttcagctgctagtcttgcagatttcttatcagcggatgagagaccctttttcctgaggtatgcttgcgccttt 128  Q
    |||||||||||||||||| |||||| |||||||||||||||||   ||||||||||||||| |||||||||||||||| ||||||||||||| | |||||    
T  33293092 atcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcaccttt 33293191  T
Q  129 tcgagatcgccttctttttcagcaagtgctttcttacagtccatcatccctgcaccggtttcttctct 196  Q
    || ||||| |||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  33293192 tcaagatcaccttctgtttcagcatgagctttcttacagtccatcatcccagcaccggtttcttctct 33293259  T

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Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 33258324 - 33258480
Alignment:
Q  39 tatgtaccgattctttcttcagctgctagtcttgcagatttcttatcagcggatgagagaccctttttcctgaggtatgcttgcgccttttcgagatcgc 138  Q
    ||||||||||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||||||||  |||| |||||||||| |||||| ||||| |    
T  33258324 tatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcac 33258423  T
Q  139 cttctttttcagcaagtgctttcttacagtccatcatccctgcaccggtttcttctc 195  Q
    ||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||    
T  33258424 cttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctc 33258480  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 31565022 - 31564921
Alignment:
Q  29 atcgtgaatgtatgtaccgattctttcttcagctgctagtcttgcagatttcttatcagcggatgagagaccctttttcctgaggtatgcttgcgccttt 128  Q
    ||||||||||||||||||||||||| |||||||  || ||||| | |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  31565022 atcgtgaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttt 31564923  T
Q  129 tc 130  Q
    ||    
T  31564922 tc 31564921  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 28873091 - 28872980
Alignment:
Q  85 cagcggatgagagaccctttttcctgaggtatgcttgcgccttttcgagatcgccttctttttcagcaagtgctttcttacagtccatcatccctgcacc 184  Q
    |||| ||||||||||||||||  ||||||||||||| ||||||||| ||||| |||||| |||| ||||| ||||||||||||||||||||||  | |||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcctggaacc 28872992  T
Q  185 ggtttcttctct 196  Q
    ||||||||||||    
T  28872991 ggtttcttctct 28872980  T

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Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 33269673 - 33269740
Alignment:
Q  39 tatgtaccgattctttcttcagctgctagtcttgcagatttcttatcagcggatgagagacccttttt 106  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33269673 tatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 33395163 - 33395335
Alignment:
Q  20 gatgcgttcatcgtgaatgtatgtaccgattctttcttcagctgctagtcttgcagatttcttatcagcggatgagagaccctttttcctgaggtatgct 119  Q
    ||||||| |||||| ||||||| ||||||||||| ||||||||||||| ||  | |||||||| ||||| ||||||||||||||| | || ||||||| |    
T  33395163 gatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgat 33395262  T
Q  120 tgcgccttttcgagatcgccttctttttcagcaagtgctttcttacagtccatcatccctgcaccggtttctt 192  Q
    || |||||||| ||||| ||||   |||| || |  ||||||||||||||||| ||||| ||||  |||||||    
T  33395263 tgggccttttcaagatcacctttagtttcggctaaggctttcttacagtccataatcccagcacttgtttctt 33395335  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 33279082 - 33279198
Alignment:
Q  75 gatttcttatcagcggatgagagaccctttttcctgaggtatgcttgcgccttttcgagatcgccttctttttcagcaagtgctttcttacagtccatca 174  Q
    |||||||| ||||| ||| |||||||||||||| | ||||||||||||||||||||  |||  |||||  |||| ||||| || || ||||||||||||     
T  33279082 gatttcttgtcagctgataagagaccctttttc-taaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattattacagtccatcg 33279180  T
Q  175 tccctgcaccggtttctt 192  Q
    |||| |||||||||||||    
T  33279181 tcccagcaccggtttctt 33279198  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 33384166 - 33384217
Alignment:
Q  143 tttttcagcaagtgctttcttacagtccatcatccctgcaccggtttcttct 194  Q
    ||||||||||||  |||||||||||||||||||| ||||||| |||||||||    
T  33384166 tttttcagcaagaactttcttacagtccatcatctctgcacctgtttcttct 33384217  T

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Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 17447873 - 17447695
Alignment:
Q  19 cgatgcgttcatcgtgaatgtatgtaccgattctttcttcagctgctagtcttgcagatttcttatcagcggatgagaga-ccctttttcctgaggtatg 117  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| |||||| | |||||||||||||||||||||||| |||||||| ||||||||||    
T  17447873 cgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatg 17447774  T
Q  118 cttgcgccttttcgagatcgccttctttttcagcaagtgctttcttacagtccatcatccctgcaccggtttcttctct 196  Q
    ||||||||||||| ||||| |||||  |||| ||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  17447773 cttgcgccttttcaagatcaccttcagtttcggcaagggctttcttacagtccataatcccagcaccggtttcttctct 17447695  T

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Target: scaffold0428 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 2445 - 2601
Alignment:
Q  39 tatgtaccgattctttcttcagctgctagtcttgcagatttcttatcagcggatgagagaccctttttcctgaggtatgcttgcgccttttcgagatcgc 138  Q
    ||||||||||||||| ||||  ||||||||||  | ||||||||||||||||||||||||||||||||  |||| |||||||||| |||||| ||||| |    
T  2445 tatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcac 2544  T
Q  139 cttctttttcagcaagtgctttcttacagtccatcatccctgcaccggtttcttctc 195  Q
    ||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||    
T  2545 cttctgtttcggcacgagctttcttacagtccatcatccctgcaccggtttcttctc 2601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 15171 - 15055
Alignment:
Q  75 gatttcttatcagcggatgagagaccctttttcctgaggtatgcttgcgccttttcgagatcgccttctttttcagcaagtgctttcttacagtccatca 174  Q
    |||||||| ||||| ||| |||||||||||||| | ||||||||||||||||||||  |||  |||||  |||| ||||| || || ||||||||||||     
T  15171 gatttcttgtcagctgataagagaccctttttc-taaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattattacagtccatcg 15073  T
Q  175 tccctgcaccggtttctt 192  Q
    |||| |||||||||||||    
T  15072 tcccagcaccggtttctt 15055  T

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