View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_high_15 (Length: 408)
Name: NF1842_high_15
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 393
Target Start/End: Complemental strand, 30408687 - 30408309
Alignment:
| Q |
15 |
ctttggtcatgaattcatatactaaaatccgataggaaccctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaatt |
114 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408687 |
ctttggtcacaaattcatatactaaaatccgataggaaccctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaatt |
30408588 |
T |
|
| Q |
115 |
gatttttgcctgaagtacaaggtttaattagtctcatcatagtcaaaatcaaaattctcatttgtcaccatctatttaattttccacaaaaaacaaggtt |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408587 |
gatttttgcctgaagtacaaggtttaattattctcatcatagtcaaaatcaaaattctcatttgtcaccatctatttaattttccacaaaaaacaaggtt |
30408488 |
T |
|
| Q |
215 |
cataaactaatttgatatttccgaacttcaaaataaaagtaagcgacactcaccaaccattcactatgttcctggttgctttcattgttaaacatcagca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30408487 |
cataaactaatttgatatttccgaacttcaaaataaaagtaagcgacactcaccaaccattcactatgttcctggttgctttcattgttaaacatcatca |
30408388 |
T |
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| Q |
315 |
cagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaa |
393 |
Q |
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| T |
30408387 |
cagcaacaacaaaaccagtacctggtttcgtaggagcttgcatgtgctcatcgatccaccccttgaataccctaccaaa |
30408309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 30411547 - 30411448
Alignment:
| Q |
54 |
cctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaattgatttttgcctgaagtacaaggtttaattagtctcatca |
153 |
Q |
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| T |
30411547 |
cctctaatcagtaaccaatcagtttcacgagattaggatgatgcagctgcccaagataattgatttctgcctaaaatataaggtttaattagtctcatca |
30411448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 393
Target Start/End: Complemental strand, 30411370 - 30411233
Alignment:
| Q |
259 |
gacactcaccaaccattcactatgttcc---tggttgctttcattgttaaacatcagcacagcaacaacaaaaccagtacctggtttcgtaggagcttgc |
355 |
Q |
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||||||||||||||||||| | ||| || ||| ||||||| ||| |||||||| |||||||||||| ||||||||||| |||| ||||||||| || |
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| T |
30411370 |
gacactcaccaaccattcattctgtcccagttggctgctttctttgataaacatcttaacagcaacaacataaccagtaccttgtttagtaggagctagc |
30411271 |
T |
|
| Q |
356 |
gtgtgctcatcgatccaccccttgaataccctaccaaa |
393 |
Q |
| |
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||||||||||||||||||||||| || || |||||||| |
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| T |
30411270 |
gtgtgctcatcgatccaccccttaaagacactaccaaa |
30411233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 262 - 393
Target Start/End: Complemental strand, 30421478 - 30421347
Alignment:
| Q |
262 |
actcaccaaccattcactatgttcctggttgctttcattgttaaacatcagcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgc |
361 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | ||||| | || ||||||| ||||||||||||||||||||| ||||||||| | |||||| |
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| T |
30421478 |
actcaccaaccattcactatgtccctgactgctttcttggttaagcctcttgacagcaataacaaaaccagtacctggtttagtaggagctagtgtgtgc |
30421379 |
T |
|
| Q |
362 |
tcatcgatccaccccttgaataccctaccaaa |
393 |
Q |
| |
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||||||||||| ||||| ||||| | |||||| |
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| T |
30421378 |
tcatcgatccaacccttaaatacacaaccaaa |
30421347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 30421893 - 30421791
Alignment:
| Q |
17 |
ttggtcatgaattcatatactaaaatccgataggaaccctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaattga |
116 |
Q |
| |
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||||||| ||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||| ||||| |||||| ||||||| ||||||||||||| |
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| T |
30421893 |
ttggtcacaaattcatataccaaaatccggtagtcatcctctaagcagtaacctatcagtttcactagatttggatgatgcagctgtccaaggtaattga |
30421794 |
T |
|
| Q |
117 |
ttt |
119 |
Q |
| |
|
||| |
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|
| T |
30421793 |
ttt |
30421791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 393
Target Start/End: Complemental strand, 30404670 - 30404489
Alignment:
| Q |
213 |
ttcataaactaatttgatattt-ccgaacttcaaaataaaagtaagcgacactcaccaaccattcactatgttcctggttgctttcattgttaaacatca |
311 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||| ||| ||| |||||| |||||||||||||||||| |||| ||||||| || ||| | | || |
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| T |
30404670 |
ttcataaactaatttgttattttcctaacttcaaacagaaattaaatgacacttaccaaccattcactatgtccctgattgcttttatcgttgagcctct |
30404571 |
T |
|
| Q |
312 |
gcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaa |
393 |
Q |
| |
|
||||| ||| |||||||||||||| |||| || || ||| | ||||||||||||||||| ||||| ||||| | |||||| |
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| T |
30404570 |
tcacagaaacggcaaaaccagtaccttgtttagtcggggctagtgtgtgctcatcgatccaacccttaaatacacaaccaaa |
30404489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 378
Target Start/End: Complemental strand, 30401252 - 30401136
Alignment:
| Q |
262 |
actcaccaaccattcactatgttcctggttgctttcattgttaaacatcagcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgc |
361 |
Q |
| |
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|||||||||||||||||| ||||||||| ||| ||||||||| | || |||||||||| ||||||| ||||||||| || || || ||||||| |
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| T |
30401252 |
actcaccaaccattcactgggttcctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccagaacctggtttagtggggcctaacgtgtgc |
30401153 |
T |
|
| Q |
362 |
tcatcgatccacccctt |
378 |
Q |
| |
|
||||||||||||||||| |
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| T |
30401152 |
tcatcgatccacccctt |
30401136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 30388948 - 30388899
Alignment:
| Q |
56 |
tctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgccc |
105 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| ||||||||| |
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|
| T |
30388948 |
tctaagcagtaaccaatcagtctcacaagattaggatgactcagctgccc |
30388899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 30401463 - 30401416
Alignment:
| Q |
54 |
cctctaagcagtaaccaatcagtttcacgagattaggatgacgcagct |
101 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| ||||| |
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|
| T |
30401463 |
cctctaagcagtaaccaatcagtctcacaagattaggatgacacagct |
30401416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 30404785 - 30404720
Alignment:
| Q |
54 |
cctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaattgattt |
119 |
Q |
| |
|
|||||| ||| |||||||||| |||||| |||||||||||| ||||||| || || |||||||||| |
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| T |
30404785 |
cctctatgcaataaccaatcaatttcacaagattaggatgatgcagctgtcccagataattgattt |
30404720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 31445346 - 31445278
Alignment:
| Q |
54 |
cctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaattgatttttg |
122 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||| | |||| ||||||||||| |
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| T |
31445346 |
cctctaagcagtaaccaatcagtttgacaagattaggatgacgcagctggtccaggtcattgatttttg |
31445278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 34150148 - 34150088
Alignment:
| Q |
59 |
aagcagtaaccaatcagtttcacgagattaggatgacgcagctgcccaaggtaattgattt |
119 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||| ||||||| || ||||||||||||| |
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|
| T |
34150148 |
aagcagtaaccgatcagtttcacaagattaggatgatgcagctgtcccaggtaattgattt |
34150088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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