View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_high_16 (Length: 387)
Name: NF1842_high_16
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 2705415 - 2705057
Alignment:
| Q |
11 |
caaaggttgtgttggagttagtatgttgattgaaggaacaagtttttgttttgttgttgcacatttagcttcaggggaaaagaaaggtgatgaaggtaga |
110 |
Q |
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| T |
2705415 |
caaaggttgtgttggagttagtatgttgattgaaggaacaagtttttgttttgttgttgcacatttagcttcgggggaaaagaaaggtgatgaaggtaga |
2705316 |
T |
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| Q |
111 |
aggaatcatcaagttgaagaaatttttagaagaacatcttttcctaggaccacaaaacatcatcaacattatcctctaacaatcttaggccatgagtaag |
210 |
Q |
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| T |
2705315 |
aggaatcatcaagttgaagaaatttttagaagaacatcttttcctaggaccacaaaacatcatcaacattatcctctaacaatcttaggccacgagtaag |
2705216 |
T |
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| Q |
211 |
tttgtatctaccttatattaatgttgttctacttgtattttgtccctttgtgttttttcttgtttatgatgattggagtaataaaattcagtcacagtaa |
310 |
Q |
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| T |
2705215 |
tttgtatctaccttatattaatgttgttttacttgtattttgtccctttgt-ttttttcttgtttatgatgattggagtaataaaatgcagtcacagtaa |
2705117 |
T |
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| Q |
311 |
ctcaaattgaacttgaatttgtttattatnnnnnnncttgtagttttggtcaccatatttt |
371 |
Q |
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| T |
2705116 |
ctcaaattgaacctgaa-ttgtttattataaaaaaacttgtagttttggtcaccatatttt |
2705057 |
T |
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