View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1842_high_18 (Length: 349)
Name: NF1842_high_18
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 29847367 - 29847034
Alignment:
| Q |
1 |
gagttgtgaggaaaagtttgtgttctgcagcatagtttcttgatgaccaaagaaagagcttcttctctttgtctttgatggccattgaaatgtgtggaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29847367 |
gagttgtgaggaaaagtttgtgttctgcagcatagtttcttgatgaccaaagaaagagcttcttctctttgtctttgatggccattgaaatgtgtggaaa |
29847268 |
T |
|
| Q |
101 |
tggaagcaagtgctttggagtgagtgtgatgannnnnnnnnnnnnnnnnnnnnatatattaggaaactttttggttgttaaggtttagggacaaatgaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29847267 |
tggaagcaagtgctttggagtgagtgtgatgagttgtgttgtgttgtgttgtgatatattaggaaactttttggttgttaaggtttagggacaaatgaga |
29847168 |
T |
|
| Q |
201 |
ttcgtttttggagaaattaggataattattgtgtcattgattattgggagatgtgaaagagagaaaaaagagggaggtaataaagcaattagatctttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29847167 |
ttcgtttttggagaaattaggataattattgtgtcattgattattgggagatgtgaaagagagaaaaaagagggaggtaataaagcaattagatctttct |
29847068 |
T |
|
| Q |
301 |
tctaaaaaatacataaagcaatgaaggaaagata |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29847067 |
tctaaaaaatacataaagcaatgaaggaaagata |
29847034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University