View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1842_high_23 (Length: 287)
Name: NF1842_high_23
Description: NF1842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1842_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 40143520 - 40143790
Alignment:
| Q |
1 |
taatcaaaacttaaaagctatacaaattgaaaagaaaagtgtcatacacatcatactcacccttttcttttatattattctaaatcaatttgaagaatgc |
100 |
Q |
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| T |
40143520 |
taatcaaaacttaaaagctatacaaattaaaaagaaaagtgtcatacacatcatactcacccttttcttttatattattctaaatcaatttgaagaatgc |
40143619 |
T |
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| Q |
101 |
tgtataagattaggaagcatgaacaaaacaaatacactcatcatctaaacttatttggaacaaactcaatatacttctccgttgtgtgttttccagatgc |
200 |
Q |
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| T |
40143620 |
tttataagattaggaagcatgaacaaaacaaatacactcatcatctaaacttatttggaacaaactcaatatacttctctgttgtgtgttttccagatgc |
40143719 |
T |
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| Q |
201 |
cttttgacggatttgaatgtgttacttttacaattttctgtctatgttgttgtggtttctttgtcgcattt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40143720 |
cttttgacggatttgaatgtgttacttttacaattttctgtctatgttgttgtggtttctttgtcgcattt |
40143790 |
T |
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